Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90376 | Canola | nucleus | 93.26 | 92.28 |
| CDX75697 | Canola | nucleus | 82.98 | 79.32 |
| CDX69357 | Canola | nucleus | 82.62 | 78.98 |
| AT4G40060.1 | Thale cress | nucleus | 81.56 | 78.23 |
| CDY25596 | Canola | nucleus | 63.83 | 67.67 |
| CDY25597 | Canola | nucleus | 71.63 | 67.56 |
| CDX89467 | Canola | nucleus | 70.92 | 66.67 |
| CDY13761 | Canola | nucleus | 70.21 | 63.67 |
| CDX76923 | Canola | nucleus | 69.86 | 63.55 |
| CDY48942 | Canola | nucleus | 31.56 | 54.94 |
| CDX99719 | Canola | nucleus | 36.52 | 52.82 |
| KRH31331 | Soybean | nucleus | 51.42 | 46.18 |
| KRH59287 | Soybean | nucleus | 50.0 | 45.93 |
| KRG97544 | Soybean | nucleus | 51.06 | 44.72 |
| KRH43132 | Soybean | nucleus | 49.29 | 44.55 |
| Solyc05g051460.2.1 | Tomato | nucleus | 47.87 | 43.13 |
| CDY69618 | Canola | nucleus | 45.04 | 41.64 |
| PGSC0003DMT400043251 | Potato | nucleus | 47.87 | 41.54 |
| CDY67332 | Canola | nucleus | 44.68 | 41.31 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 48.94 | 41.19 |
| CDY37819 | Canola | nucleus | 44.33 | 40.32 |
| CDY33967 | Canola | nucleus | 43.97 | 40.0 |
| CDY11680 | Canola | nucleus | 25.18 | 39.89 |
| PGSC0003DMT400041655 | Potato | nucleus | 48.58 | 39.37 |
| Solyc11g010270.1.1 | Tomato | nucleus | 48.23 | 38.86 |
| CDX67451 | Canola | nucleus | 24.47 | 38.76 |
| CDY28803 | Canola | nucleus | 18.44 | 33.33 |
| CDY28673 | Canola | nucleus | 30.85 | 31.99 |
| CDY69536 | Canola | nucleus | 17.38 | 31.41 |
| CDY49056 | Canola | nucleus | 29.08 | 31.18 |
| CDY37519 | Canola | nucleus | 28.72 | 31.15 |
| CDY69290 | Canola | nucleus | 26.95 | 30.4 |
| CDY33168 | Canola | nucleus | 19.86 | 29.63 |
| CDX75029 | Canola | nucleus | 19.5 | 29.41 |
| CDY69034 | Canola | nucleus | 27.66 | 29.1 |
| CDY48391 | Canola | nucleus | 25.89 | 28.97 |
| CDY44091 | Canola | nucleus | 26.6 | 28.2 |
| CDY46427 | Canola | nucleus | 25.18 | 27.95 |
| CDY52767 | Canola | nucleus | 24.82 | 27.56 |
| CDY23547 | Canola | nucleus | 27.3 | 27.5 |
| CDY28696 | Canola | nucleus | 25.53 | 27.27 |
| CDY38759 | Canola | nucleus | 27.3 | 27.11 |
| CDY11659 | Canola | nucleus | 27.3 | 26.74 |
| CDX78614 | Canola | nucleus | 28.37 | 26.58 |
| CDY70306 | Canola | nucleus | 26.95 | 26.03 |
| CDX85054 | Canola | nucleus | 28.01 | 25.73 |
| CDX70596 | Canola | nucleus | 27.66 | 25.66 |
| CDY70870 | Canola | nucleus | 27.3 | 25.58 |
| CDX69546 | Canola | nucleus | 28.01 | 25.57 |
| CDX80887 | Canola | nucleus | 19.5 | 25.23 |
| CDY57869 | Canola | nucleus | 20.21 | 24.78 |
| CDY04896 | Canola | nucleus | 19.86 | 24.67 |
| CDX76591 | Canola | nucleus | 19.86 | 24.45 |
| CDY11269 | Canola | nucleus | 18.79 | 24.31 |
| CDY71532 | Canola | nucleus | 19.5 | 24.12 |
| CDY27308 | Canola | nucleus | 19.5 | 24.02 |
| CDX89136 | Canola | nucleus | 19.15 | 23.58 |
| CDY42007 | Canola | nucleus | 18.09 | 23.29 |
| CDX70283 | Canola | nucleus | 18.09 | 23.29 |
| CDY71047 | Canola | nucleus | 18.79 | 23.04 |
| CDY10356 | Canola | nucleus | 18.79 | 23.04 |
| CDX70284 | Canola | nucleus | 18.79 | 23.04 |
| CDX80037 | Canola | nucleus | 20.21 | 22.44 |
| CDY41547 | Canola | nucleus | 20.21 | 22.44 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078HPH2 | UniProt:A0A078HPH2 | EnsemblPlants:CDY39476 | ProteinID:CDY39476 |
| ProteinID:CDY39476.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00067972001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF196 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EECD30 | SEG:seg |
Description
BnaC03g60860DBnaC03g60860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPH2]
Coordinates
chrLK032448:-:255933..257119
Molecular Weight (calculated)
32172.8 Da
IEP (calculated)
4.640
GRAVY (calculated)
-0.996
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRLSSSDSM YGLISNSTDE QSFRGYGHNF QSMLDGYEDD STMMEEYSGN HHMGQSEKKR RLRVDQVKAL EKNFELENKL EPERKTKLAQ ELGLEPRQVA
101: VWFQNRRARW KTKQLEKDYG LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEEDN NKVTAESDIS AVKEENVPSS PPEFIEHSTG FEYRRSFTDL
201: CDLLPNSTAP DGGSSDSCDS SAETSSENGR LTTPTVTGGN LFQFVKTEQM EDHDDFLSGE EGCCFFSDEQ PPSLHWYSAS DH
101: VWFQNRRARW KTKQLEKDYG LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEEDN NKVTAESDIS AVKEENVPSS PPEFIEHSTG FEYRRSFTDL
201: CDLLPNSTAP DGGSSDSCDS SAETSSENGR LTTPTVTGGN LFQFVKTEQM EDHDDFLSGE EGCCFFSDEQ PPSLHWYSAS DH
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
Arabidopsis Description
ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.