Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11269 | Canola | nucleus | 95.41 | 95.41 |
| CDY04896 | Canola | nucleus | 82.57 | 79.3 |
| AT5G03790.1 | Thale cress | nucleus | 85.32 | 79.15 |
| CDY71047 | Canola | nucleus | 81.65 | 77.39 |
| CDX70284 | Canola | nucleus | 80.73 | 76.52 |
| CDY10356 | Canola | nucleus | 80.73 | 76.52 |
| CDX70283 | Canola | nucleus | 63.3 | 63.01 |
| CDY42007 | Canola | nucleus | 61.93 | 61.64 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 48.62 | 48.18 |
| Solyc09g008810.2.1 | Tomato | nucleus | 49.08 | 44.4 |
| PGSC0003DMT400006949 | Potato | nucleus | 49.08 | 44.03 |
| CDX75029 | Canola | nucleus | 35.32 | 41.18 |
| CDY33168 | Canola | nucleus | 34.4 | 39.68 |
| CDY48942 | Canola | nucleus | 23.85 | 32.1 |
| CDY69536 | Canola | nucleus | 20.64 | 28.85 |
| CDY11680 | Canola | nucleus | 23.39 | 28.65 |
| CDX67451 | Canola | nucleus | 23.39 | 28.65 |
| CDY28803 | Canola | nucleus | 20.18 | 28.21 |
| CDX99719 | Canola | nucleus | 21.56 | 24.1 |
| CDY69290 | Canola | nucleus | 26.61 | 23.2 |
| CDY71532 | Canola | nucleus | 23.85 | 22.81 |
| CDX89136 | Canola | nucleus | 23.85 | 22.71 |
| CDY28673 | Canola | nucleus | 27.52 | 22.06 |
| CDX76591 | Canola | nucleus | 22.94 | 21.83 |
| CDY57869 | Canola | nucleus | 22.94 | 21.74 |
| CDY49056 | Canola | nucleus | 25.69 | 21.29 |
| CDY69034 | Canola | nucleus | 26.15 | 21.27 |
| CDY37519 | Canola | nucleus | 25.23 | 21.15 |
| CDY52767 | Canola | nucleus | 24.31 | 20.87 |
| CDY46427 | Canola | nucleus | 24.31 | 20.87 |
| CDY41547 | Canola | nucleus | 24.31 | 20.87 |
| CDX70596 | Canola | nucleus | 28.9 | 20.72 |
| CDY25596 | Canola | nucleus | 25.23 | 20.68 |
| CDX78614 | Canola | nucleus | 28.44 | 20.6 |
| CDX80037 | Canola | nucleus | 23.85 | 20.47 |
| CDY69618 | Canola | nucleus | 28.44 | 20.33 |
| CDY70306 | Canola | nucleus | 27.06 | 20.21 |
| CDY27308 | Canola | nucleus | 21.1 | 20.09 |
| CDY44091 | Canola | nucleus | 24.31 | 19.92 |
| CDY48391 | Canola | nucleus | 22.94 | 19.84 |
| CDY67332 | Canola | nucleus | 27.52 | 19.67 |
| CDX85054 | Canola | nucleus | 27.52 | 19.54 |
| CDY39476 | Canola | nucleus | 25.23 | 19.5 |
| CDX69546 | Canola | nucleus | 27.52 | 19.42 |
| CDY38759 | Canola | nucleus | 25.23 | 19.37 |
| CDY37819 | Canola | nucleus | 27.52 | 19.35 |
| CDY33967 | Canola | nucleus | 27.52 | 19.35 |
| CDX75697 | Canola | nucleus | 26.15 | 19.32 |
| CDX69357 | Canola | nucleus | 26.15 | 19.32 |
| CDY23547 | Canola | nucleus | 24.77 | 19.29 |
| CDY11659 | Canola | nucleus | 25.23 | 19.1 |
| CDY25597 | Canola | nucleus | 26.15 | 19.06 |
| CDY28696 | Canola | nucleus | 22.94 | 18.94 |
| CDX76923 | Canola | nucleus | 26.61 | 18.71 |
| CDX89467 | Canola | nucleus | 25.69 | 18.67 |
| CDY70870 | Canola | nucleus | 25.69 | 18.6 |
| CDY13761 | Canola | nucleus | 26.15 | 18.33 |
| CDX90376 | Canola | nucleus | 23.85 | 18.25 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078CVW6 | EnsemblPlants:CDX80887 | ProteinID:CDX80887 | ProteinID:CDX80887.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00134287001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF287 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EDC651 | : | : | : |
Description
BnaC03g01410D
Coordinates
chrLK031823:+:657291..658773
Molecular Weight (calculated)
25088.6 Da
IEP (calculated)
9.435
GRAVY (calculated)
-0.756
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWSTTNNLE NMRVAFMPPT WPESSSFNSL HSFNYDPYAA GNSYTPADTQ TGPVISVPEP DKIINAYRLP SNNNEITKKK RLTSGQLASL ERSFQDEIKL
101: DSARKLKLSR ELGLQPRQIA VWFQNRRARW KAKQLEQLYD SLRQEYDVVS REKQMLHEEV KKLRAILRDH GLIKKQISNV TSGEDTTEIP SVVTTKVYGT
201: DQYNNQMVVA SSCWPSYP
101: DSARKLKLSR ELGLQPRQIA VWFQNRRARW KAKQLEQLYD SLRQEYDVVS REKQMLHEEV KKLRAILRDH GLIKKQISNV TSGEDTTEIP SVVTTKVYGT
201: DQYNNQMVVA SSCWPSYP
001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
Arabidopsis Description
ATHB-51Putative homeobox-leucine zipper protein ATHB-51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.