Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28803 | Canola | nucleus | 92.95 | 92.95 |
| AT5G53980.1 | Thale cress | nucleus | 83.33 | 83.33 |
| VIT_10s0003g00380.t01 | Wine grape | nucleus | 44.87 | 40.94 |
| VIT_19s0014g02110.t01 | Wine grape | nucleus | 40.38 | 39.13 |
| PGSC0003DMT400081296 | Potato | nucleus | 42.95 | 37.43 |
| Solyc02g077590.1.1 | Tomato | nucleus | 41.67 | 36.31 |
| Solyc07g062790.1.1 | Tomato | nucleus | 39.1 | 35.06 |
| KRH26193 | Soybean | nucleus | 41.67 | 33.68 |
| KRH55168 | Soybean | nucleus | 42.95 | 33.5 |
| PGSC0003DMT400032390 | Potato | nucleus | 37.82 | 33.33 |
| PGSC0003DMT400054818 | Potato | nucleus | 44.23 | 32.55 |
| CDX67451 | Canola | nucleus | 32.69 | 28.65 |
| CDY11680 | Canola | nucleus | 32.69 | 28.65 |
| CDY48942 | Canola | nucleus | 26.92 | 25.93 |
| CDY11269 | Canola | nucleus | 29.49 | 21.1 |
| CDX80887 | Canola | nucleus | 28.85 | 20.64 |
| CDY52767 | Canola | nucleus | 33.33 | 20.47 |
| CDY46427 | Canola | nucleus | 33.33 | 20.47 |
| CDY10356 | Canola | nucleus | 30.13 | 20.43 |
| CDX70284 | Canola | nucleus | 30.13 | 20.43 |
| CDY04896 | Canola | nucleus | 29.49 | 20.26 |
| CDY33168 | Canola | nucleus | 24.36 | 20.11 |
| CDY71047 | Canola | nucleus | 29.49 | 20.0 |
| CDX75029 | Canola | nucleus | 23.72 | 19.79 |
| CDY49056 | Canola | nucleus | 33.33 | 19.77 |
| CDY37519 | Canola | nucleus | 32.69 | 19.62 |
| CDY69290 | Canola | nucleus | 31.41 | 19.6 |
| CDX99719 | Canola | nucleus | 24.36 | 19.49 |
| CDX70283 | Canola | nucleus | 26.92 | 19.18 |
| CDY42007 | Canola | nucleus | 26.92 | 19.18 |
| CDY25596 | Canola | nucleus | 32.05 | 18.8 |
| CDX76591 | Canola | nucleus | 27.56 | 18.78 |
| CDY28673 | Canola | nucleus | 32.69 | 18.75 |
| CDY69034 | Canola | nucleus | 32.05 | 18.66 |
| CDY57869 | Canola | nucleus | 26.92 | 18.26 |
| CDY28696 | Canola | nucleus | 30.77 | 18.18 |
| CDY71532 | Canola | nucleus | 26.28 | 17.98 |
| CDX89136 | Canola | nucleus | 26.28 | 17.9 |
| CDX90376 | Canola | nucleus | 32.05 | 17.54 |
| CDY48391 | Canola | nucleus | 28.21 | 17.46 |
| CDY39476 | Canola | nucleus | 31.41 | 17.38 |
| CDY13761 | Canola | nucleus | 34.62 | 17.36 |
| CDX89467 | Canola | nucleus | 33.33 | 17.33 |
| CDY44091 | Canola | nucleus | 29.49 | 17.29 |
| CDY25597 | Canola | nucleus | 32.69 | 17.06 |
| CDX76923 | Canola | nucleus | 33.33 | 16.77 |
| CDX75697 | Canola | nucleus | 31.41 | 16.61 |
| CDX69357 | Canola | nucleus | 31.41 | 16.61 |
| CDY38759 | Canola | nucleus | 30.13 | 16.55 |
| CDY69618 | Canola | nucleus | 32.05 | 16.39 |
| CDY11659 | Canola | nucleus | 30.13 | 16.32 |
| CDX78614 | Canola | nucleus | 31.41 | 16.28 |
| CDY70306 | Canola | nucleus | 30.13 | 16.1 |
| CDY23547 | Canola | nucleus | 28.85 | 16.07 |
| CDY67332 | Canola | nucleus | 31.41 | 16.07 |
| CDX85054 | Canola | nucleus | 31.41 | 15.96 |
| CDX69546 | Canola | nucleus | 31.41 | 15.86 |
| CDX70596 | Canola | nucleus | 30.77 | 15.79 |
| CDY27308 | Canola | nucleus | 23.08 | 15.72 |
| CDY70870 | Canola | nucleus | 30.13 | 15.61 |
| CDY41547 | Canola | nucleus | 25.0 | 15.35 |
| CDX80037 | Canola | nucleus | 25.0 | 15.35 |
| CDY33967 | Canola | nucleus | 30.13 | 15.16 |
| CDY37819 | Canola | nucleus | 29.49 | 14.84 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078JVD7 | UniProt:A0A078JVD7 | EnsemblPlants:CDY69536 | ProteinID:CDY69536 |
| ProteinID:CDY69536.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00088515001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF257 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEEDA6 |
Description
BnaCnng64030DBnaCnng64030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVD7]
Coordinates
chrLK039644:+:860..1330
Molecular Weight (calculated)
17913.0 Da
IEP (calculated)
7.955
GRAVY (calculated)
-0.871
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPQGQSRN KKKRLTQEQV RKLEKCFTLN NKLDPDLKLQ LSNTLGLPQR QVAVWFQNKR ARSKTQSLEL QYCNLQSKLE AVLSDKAKLE HQVQFLQDEL
101: KRSRNQLALF THQDSPVDDS NLGSCEEGND NQVVVFDELY DCFVTNGHGS SSTSWA
101: KRSRNQLALF THQDSPVDDS NLGSCEEGND NQVVVFDELY DCFVTNGHGS SSTSWA
001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
Arabidopsis Description
ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.