Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014417.1-P | Field mustard | nucleus | 98.69 | 99.12 |
| CDY71532 | Canola | nucleus | 96.94 | 97.37 |
| CDY57869 | Canola | nucleus | 86.03 | 85.65 |
| CDX76591 | Canola | nucleus | 85.59 | 85.59 |
| AT3G61890.1 | Thale cress | nucleus | 82.97 | 80.85 |
| CDY41547 | Canola | nucleus | 67.25 | 60.63 |
| CDX80037 | Canola | nucleus | 66.81 | 60.24 |
| CDY27308 | Canola | nucleus | 58.08 | 58.08 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 51.53 | 48.56 |
| KRH47840 | Soybean | nucleus | 49.34 | 47.48 |
| KRH06407 | Soybean | nucleus | 50.66 | 47.35 |
| PGSC0003DMT400000694 | Potato | nucleus | 51.53 | 46.83 |
| Solyc01g096320.2.1 | Tomato | nucleus | 47.6 | 45.61 |
| EER99231 | Sorghum | nucleus | 38.86 | 36.63 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 34.5 | 35.91 |
| Zm00001d021268_P001 | Maize | nucleus | 37.12 | 35.56 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 38.43 | 35.34 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 38.43 | 35.2 |
| Os09t0528200-01 | Rice | nucleus | 37.99 | 34.94 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 37.99 | 34.94 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 37.99 | 34.94 |
| Zm00001d006195_P001 | Maize | nucleus | 34.5 | 32.38 |
| CDY11680 | Canola | nucleus | 24.45 | 31.46 |
| CDX67451 | Canola | nucleus | 24.45 | 31.46 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 29.26 | 30.32 |
| CDY48942 | Canola | nucleus | 20.96 | 29.63 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 37.12 | 29.31 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 31.0 | 29.22 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 28.38 | 28.89 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 28.38 | 28.76 |
| Zm00001d002799_P001 | Maize | nucleus | 32.75 | 28.74 |
| Zm00001d017422_P001 | Maize | nucleus | 29.26 | 28.51 |
| EES05814 | Sorghum | nucleus | 30.57 | 28.0 |
| Os04t0541700-02 | Rice | nucleus | 33.62 | 27.9 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 31.44 | 27.69 |
| EES11198 | Sorghum | nucleus | 32.31 | 27.41 |
| Zm00001d025964_P001 | Maize | nucleus | 31.88 | 27.24 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 31.44 | 27.07 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 31.0 | 26.79 |
| CDX75029 | Canola | nucleus | 21.83 | 26.74 |
| CDY33168 | Canola | nucleus | 21.83 | 26.45 |
| CDY28803 | Canola | nucleus | 17.9 | 26.28 |
| CDY69536 | Canola | nucleus | 17.9 | 26.28 |
| CDX99719 | Canola | nucleus | 22.27 | 26.15 |
| Os02t0649300-01 | Rice | nucleus | 28.82 | 25.29 |
| CDX80887 | Canola | nucleus | 22.71 | 23.85 |
| CDY11269 | Canola | nucleus | 22.71 | 23.85 |
| CDY37519 | Canola | nucleus | 27.07 | 23.85 |
| CDX70284 | Canola | nucleus | 23.58 | 23.48 |
| CDY10356 | Canola | nucleus | 23.58 | 23.48 |
| CDY49056 | Canola | nucleus | 26.64 | 23.19 |
| CDY71047 | Canola | nucleus | 23.14 | 23.04 |
| CDY04896 | Canola | nucleus | 22.71 | 22.91 |
| CDY28673 | Canola | nucleus | 27.07 | 22.79 |
| CDY25596 | Canola | nucleus | 25.76 | 22.18 |
| CDY69290 | Canola | nucleus | 24.02 | 22.0 |
| CDY48391 | Canola | nucleus | 24.02 | 21.83 |
| CDY38759 | Canola | nucleus | 26.64 | 21.48 |
| CDX70283 | Canola | nucleus | 20.52 | 21.46 |
| CDY42007 | Canola | nucleus | 20.52 | 21.46 |
| CDY11659 | Canola | nucleus | 26.64 | 21.18 |
| CDY23547 | Canola | nucleus | 25.76 | 21.07 |
| CDY44091 | Canola | nucleus | 24.02 | 20.68 |
| CDY69618 | Canola | nucleus | 27.51 | 20.66 |
| CDY69034 | Canola | nucleus | 24.02 | 20.52 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 28.38 | 20.44 |
| CDY67332 | Canola | nucleus | 27.07 | 20.33 |
| CDY46427 | Canola | nucleus | 22.27 | 20.08 |
| CDY52767 | Canola | nucleus | 22.27 | 20.08 |
| CDY28696 | Canola | nucleus | 23.14 | 20.08 |
| CDY25597 | Canola | nucleus | 26.2 | 20.07 |
| CDX69357 | Canola | nucleus | 25.76 | 20.0 |
| CDX89467 | Canola | nucleus | 26.2 | 20.0 |
| CDY37819 | Canola | nucleus | 27.07 | 20.0 |
| CDY33967 | Canola | nucleus | 27.07 | 20.0 |
| CDY13761 | Canola | nucleus | 27.07 | 19.94 |
| CDX76923 | Canola | nucleus | 26.64 | 19.68 |
| CDX75697 | Canola | nucleus | 25.33 | 19.66 |
| CDX85054 | Canola | nucleus | 26.2 | 19.54 |
| CDX69546 | Canola | nucleus | 26.2 | 19.42 |
| CDX90376 | Canola | nucleus | 24.02 | 19.3 |
| CDX78614 | Canola | nucleus | 25.33 | 19.27 |
| CDY70306 | Canola | nucleus | 24.45 | 19.18 |
| CDY39476 | Canola | nucleus | 23.58 | 19.15 |
| CDY70870 | Canola | nucleus | 24.89 | 18.94 |
| CDX70596 | Canola | nucleus | 24.89 | 18.75 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078DIT6 | EnsemblPlants:CDX89136 | ProteinID:CDX89136 | ProteinID:CDX89136.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00149282001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEE26F |
Description
BnaA04g00500D
Coordinates
chrLK031857:-:1273857..1275152
Molecular Weight (calculated)
27057.5 Da
IEP (calculated)
4.824
GRAVY (calculated)
-0.989
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGDFFSCF SEINSGMTMN KKKMRKGTNH KRFSEEQIKS LEVIFESETR LEPRKKVQLA RELGLQPRQV AIWFQNKRAR WKSKQLEKEY DILRANYNNL
101: ASQFEIIKKE KQALVSELQR LNEEMQKTKE ERNEKECCGE QRVALSSSTW SDNGKYEPEV RLNQGIVLCN DDIKTEYFGF EEESNHELIY IVEQADDSGL
201: TSSDNWGNFN SESLLDQSSS NYPWWDFWS
101: ASQFEIIKKE KQALVSELQR LNEEMQKTKE ERNEKECCGE QRVALSSSTW SDNGKYEPEV RLNQGIVLCN DDIKTEYFGF EEESNHELIY IVEQADDSGL
201: TSSDNWGNFN SESLLDQSSS NYPWWDFWS
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.