Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42007 Canola nucleus 98.17 98.17
CDY71047 Canola nucleus 67.58 64.35
CDY11269 Canola nucleus 63.01 63.3
CDX80887 Canola nucleus 63.01 63.3
CDX70284 Canola nucleus 65.75 62.61
CDY10356 Canola nucleus 65.75 62.61
CDY04896 Canola nucleus 64.38 62.11
Solyc09g008810.2.1 Tomato nucleus 44.75 40.66
VIT_08s0007g04200.t01 Wine grape nucleus 40.18 40.0
PGSC0003DMT400006949 Potato nucleus 44.29 39.92
CDX75029 Canola nucleus 32.42 37.97
CDY33168 Canola nucleus 31.51 36.51
CDY48942 Canola nucleus 24.2 32.72
CDX67451 Canola nucleus 22.83 28.09
CDY11680 Canola nucleus 22.83 28.09
CDY69536 Canola nucleus 19.18 26.92
CDY28803 Canola nucleus 17.81 25.0
CDX99719 Canola nucleus 20.09 22.56
CDY37519 Canola nucleus 25.11 21.15
CDY49056 Canola nucleus 25.11 20.91
CDY28673 Canola nucleus 25.57 20.59
CDX89136 Canola nucleus 21.46 20.52
CDY52767 Canola nucleus 23.74 20.47
CDY46427 Canola nucleus 23.74 20.47
CDY57869 Canola nucleus 21.46 20.43
CDY71532 Canola nucleus 21.0 20.18
CDX76591 Canola nucleus 21.0 20.09
CDY69290 Canola nucleus 22.83 20.0
CDY27308 Canola nucleus 20.09 19.21
CDY70306 Canola nucleus 25.57 19.18
CDY25596 Canola nucleus 23.29 19.17
CDY48391 Canola nucleus 21.92 19.05
CDY67332 Canola nucleus 26.48 19.02
CDY69618 Canola nucleus 26.48 19.02
CDY41547 Canola nucleus 21.92 18.9
CDY44091 Canola nucleus 22.83 18.8
CDY23547 Canola nucleus 23.74 18.57
CDX85054 Canola nucleus 26.03 18.57
CDX80037 Canola nucleus 21.46 18.5
CDX69546 Canola nucleus 26.03 18.45
CDY38759 Canola nucleus 23.74 18.31
CDX75697 Canola nucleus 24.66 18.31
CDY69034 Canola nucleus 22.37 18.28
CDX78614 Canola nucleus 25.11 18.27
CDY39476 Canola nucleus 23.29 18.09
CDY37819 Canola nucleus 25.57 18.06
CDY33967 Canola nucleus 25.57 18.06
CDY25597 Canola nucleus 24.66 18.06
CDY11659 Canola nucleus 23.74 18.06
CDX69357 Canola nucleus 24.2 17.97
CDY70870 Canola nucleus 24.66 17.94
CDX70596 Canola nucleus 24.66 17.76
CDX76923 Canola nucleus 25.11 17.74
CDY13761 Canola nucleus 24.66 17.36
CDX89467 Canola nucleus 23.74 17.33
CDX90376 Canola nucleus 22.37 17.19
CDY28696 Canola nucleus 20.09 16.67
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.1GO:A0A078C5L2EnsemblPlants:CDX70283ProteinID:CDX70283ProteinID:CDX70283.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0006139
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00136429001InterPro:Homeobox-like_sfInterPro:Homeobox_CSInterPro:Homeobox_domInterPro:IPR001356PFAM:PF00046
ScanProsite:PS00027PFscan:PS50071PANTHER:PTHR24326PANTHER:PTHR24326:SF287SMART:SM00389SUPFAM:SSF46689
UniParc:UPI0004EF1B49:::::
Description
BnaA10g26320D
Coordinates
chrLK031790:-:3908200..3909957
Molecular Weight (calculated)
25427.0 Da
IEP (calculated)
8.043
GRAVY (calculated)
-0.816
Length
219 amino acids
Sequence
(BLAST)
001: MEWSTTSNVE NMRVAFMPLQ WLESNSSNSL QNFSYDPYAG NSSTPVLTQT GPVISVPESS EKITNACQYP SNDDEMIKKK QKLTTEQLAS LEQSFQEDIK
101: LDSDRKVKLS KELRLQPRQV AVWFQNRRAR WRVKHLEESY NSLRKEYDVV SRQNQMLHDE VMNLRGVILK DHLMKRQMNL NNNQIAGGSQ IYGTDQYNNP
201: MCVASTCWPP LSSQQPYPW
Best Arabidopsis Sequence Match ( AT5G03790.1 )
(BLAST)
001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
Arabidopsis Description
ATHB-51Putative homeobox-leucine zipper protein ATHB-51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZR0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.