Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010642.1-P | Field mustard | nucleus | 98.6 | 98.25 |
| CDY39476 | Canola | nucleus | 92.28 | 93.26 |
| CDX75697 | Canola | nucleus | 83.51 | 80.68 |
| CDX69357 | Canola | nucleus | 82.81 | 80.0 |
| AT4G40060.1 | Thale cress | nucleus | 81.4 | 78.91 |
| CDY25596 | Canola | nucleus | 63.51 | 68.05 |
| CDY25597 | Canola | nucleus | 70.88 | 67.56 |
| CDX89467 | Canola | nucleus | 69.47 | 66.0 |
| CDX76923 | Canola | nucleus | 70.18 | 64.52 |
| CDY13761 | Canola | nucleus | 70.18 | 64.31 |
| CDX99719 | Canola | nucleus | 35.79 | 52.31 |
| CDY48942 | Canola | nucleus | 29.47 | 51.85 |
| KRH59287 | Soybean | nucleus | 49.12 | 45.6 |
| KRH31331 | Soybean | nucleus | 50.18 | 45.54 |
| KRH43132 | Soybean | nucleus | 48.42 | 44.23 |
| KRG97544 | Soybean | nucleus | 49.82 | 44.1 |
| Solyc05g051460.2.1 | Tomato | nucleus | 46.32 | 42.17 |
| PGSC0003DMT400043251 | Potato | nucleus | 46.32 | 40.62 |
| CDY11680 | Canola | nucleus | 25.26 | 40.45 |
| CDY69618 | Canola | nucleus | 42.81 | 40.0 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 47.02 | 40.0 |
| CDY67332 | Canola | nucleus | 42.46 | 39.67 |
| CDX67451 | Canola | nucleus | 24.56 | 39.33 |
| PGSC0003DMT400041655 | Potato | nucleus | 47.72 | 39.08 |
| CDY37819 | Canola | nucleus | 42.46 | 39.03 |
| CDY33967 | Canola | nucleus | 42.11 | 38.71 |
| Solyc11g010270.1.1 | Tomato | nucleus | 47.37 | 38.57 |
| CDY28803 | Canola | nucleus | 18.6 | 33.97 |
| CDY69536 | Canola | nucleus | 17.54 | 32.05 |
| CDY28673 | Canola | nucleus | 29.47 | 30.88 |
| CDY49056 | Canola | nucleus | 28.07 | 30.42 |
| CDY69290 | Canola | nucleus | 26.67 | 30.4 |
| CDY37519 | Canola | nucleus | 27.72 | 30.38 |
| CDX75029 | Canola | nucleus | 18.95 | 28.88 |
| CDY69034 | Canola | nucleus | 27.02 | 28.73 |
| CDY33168 | Canola | nucleus | 18.95 | 28.57 |
| CDY48391 | Canola | nucleus | 25.26 | 28.57 |
| CDY44091 | Canola | nucleus | 25.96 | 27.82 |
| CDY46427 | Canola | nucleus | 24.21 | 27.17 |
| CDY23547 | Canola | nucleus | 26.67 | 27.14 |
| CDY28696 | Canola | nucleus | 24.91 | 26.89 |
| CDY52767 | Canola | nucleus | 23.86 | 26.77 |
| CDY38759 | Canola | nucleus | 26.67 | 26.76 |
| CDY11659 | Canola | nucleus | 26.67 | 26.39 |
| CDX78614 | Canola | nucleus | 27.72 | 26.25 |
| CDY70306 | Canola | nucleus | 26.67 | 26.03 |
| CDX85054 | Canola | nucleus | 27.37 | 25.41 |
| CDX70596 | Canola | nucleus | 27.02 | 25.33 |
| CDY70870 | Canola | nucleus | 26.67 | 25.25 |
| CDX69546 | Canola | nucleus | 27.37 | 25.24 |
| CDY57869 | Canola | nucleus | 20.0 | 24.78 |
| CDY71532 | Canola | nucleus | 19.65 | 24.56 |
| CDX76591 | Canola | nucleus | 19.65 | 24.45 |
| CDY27308 | Canola | nucleus | 19.3 | 24.02 |
| CDX89136 | Canola | nucleus | 19.3 | 24.02 |
| CDX80887 | Canola | nucleus | 18.25 | 23.85 |
| CDX80037 | Canola | nucleus | 20.7 | 23.23 |
| CDY11269 | Canola | nucleus | 17.54 | 22.94 |
| CDY04896 | Canola | nucleus | 18.25 | 22.91 |
| CDY41547 | Canola | nucleus | 20.0 | 22.44 |
| CDY42007 | Canola | nucleus | 17.19 | 22.37 |
| CDX70283 | Canola | nucleus | 17.19 | 22.37 |
| CDX70284 | Canola | nucleus | 17.19 | 21.3 |
| CDY10356 | Canola | nucleus | 17.19 | 21.3 |
| CDY71047 | Canola | nucleus | 17.19 | 21.3 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078DM78 | EnsemblPlants:CDX90376 | ProteinID:CDX90376 | ProteinID:CDX90376.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00150974001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF196 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEF366 |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g16080D
Coordinates
chrLK031862:-:1468424..1469884
Molecular Weight (calculated)
32311.9 Da
IEP (calculated)
4.683
GRAVY (calculated)
-0.990
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRLSNSDSM CGLISNSTDE QNPRGYGHNF HSMLNGYEED GTTVEEYSGN HHMGQSEKKR RLRVDQVKAL EKNFELENKI EPERKTQLAQ ELGLEPRQVA
101: VWFQNRRARW KTKQLEKDYG LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEDVN NDSKVTAESD ISAVKEENVP SSPPEFIEHS TGFDYRRSFT
201: DLCDLLPNST APDGGSSDSC DSSAETSSEN GRLTPPPTVT GGNFLQFVKT EQMEDHDDFL SGEEACCFFS DEQPPSLHWY SASDH
101: VWFQNRRARW KTKQLEKDYG LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEDVN NDSKVTAESD ISAVKEENVP SSPPEFIEHS TGFDYRRSFT
201: DLCDLLPNST APDGGSSDSC DSSAETSSEN GRLTPPPTVT GGNFLQFVKT EQMEDHDDFL SGEEACCFFS DEQPPSLHWY SASDH
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
Arabidopsis Description
ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.