Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69034 | Canola | nucleus | 79.17 | 77.99 |
| CDY69290 | Canola | nucleus | 73.48 | 77.6 |
| AT3G01220.1 | Thale cress | nucleus | 82.95 | 76.57 |
| CDX78614 | Canola | nucleus | 64.77 | 56.81 |
| CDX85054 | Canola | nucleus | 64.39 | 55.37 |
| CDX70596 | Canola | nucleus | 63.26 | 54.93 |
| CDX69546 | Canola | nucleus | 64.02 | 54.69 |
| CDY70306 | Canola | nucleus | 57.58 | 52.05 |
| KRG93515 | Soybean | nucleus | 50.0 | 45.21 |
| KRH18490 | Soybean | nucleus | 49.24 | 44.67 |
| KRH40114 | Soybean | nucleus | 45.45 | 44.44 |
| KRH01157 | Soybean | nucleus | 44.32 | 43.66 |
| PGSC0003DMT400017751 | Potato | nucleus | 36.36 | 42.67 |
| PGSC0003DMT400003586 | Potato | nucleus | 36.36 | 40.17 |
| CDY52767 | Canola | nucleus | 38.64 | 40.16 |
| Solyc02g067410.1.1 | Tomato | nucleus | 39.77 | 39.92 |
| CDY46427 | Canola | nucleus | 38.26 | 39.76 |
| CDY44091 | Canola | nucleus | 38.64 | 38.35 |
| CDY38759 | Canola | nucleus | 40.53 | 37.68 |
| CDY11659 | Canola | nucleus | 40.53 | 37.15 |
| CDY23547 | Canola | nucleus | 39.02 | 36.79 |
| CDY48391 | Canola | nucleus | 34.47 | 36.11 |
| CDY70870 | Canola | nucleus | 40.53 | 35.55 |
| Solyc02g087840.2.1 | Tomato | nucleus | 41.29 | 35.28 |
| CDY48942 | Canola | nucleus | 20.83 | 33.95 |
| CDX67451 | Canola | nucleus | 22.73 | 33.71 |
| CDY11680 | Canola | nucleus | 22.73 | 33.71 |
| CDY69536 | Canola | nucleus | 18.18 | 30.77 |
| CDY28803 | Canola | nucleus | 17.8 | 30.13 |
| CDY33168 | Canola | nucleus | 19.7 | 27.51 |
| CDX75029 | Canola | nucleus | 19.32 | 27.27 |
| CDX99719 | Canola | nucleus | 19.7 | 26.67 |
| CDX69357 | Canola | nucleus | 28.79 | 25.76 |
| CDY25596 | Canola | nucleus | 25.76 | 25.56 |
| CDY39476 | Canola | nucleus | 27.27 | 25.53 |
| CDY49056 | Canola | nucleus | 25.38 | 25.48 |
| CDY37519 | Canola | nucleus | 25.0 | 25.38 |
| CDX75697 | Canola | nucleus | 28.03 | 25.08 |
| CDY28673 | Canola | nucleus | 25.76 | 25.0 |
| CDX90376 | Canola | nucleus | 26.89 | 24.91 |
| CDY25597 | Canola | nucleus | 26.89 | 23.75 |
| CDX89467 | Canola | nucleus | 26.89 | 23.67 |
| CDX76923 | Canola | nucleus | 27.65 | 23.55 |
| CDY71532 | Canola | nucleus | 20.08 | 23.25 |
| CDX89136 | Canola | nucleus | 20.08 | 23.14 |
| CDX80887 | Canola | nucleus | 18.94 | 22.94 |
| CDY13761 | Canola | nucleus | 26.89 | 22.83 |
| CDY11269 | Canola | nucleus | 18.56 | 22.48 |
| CDX76591 | Canola | nucleus | 19.32 | 22.27 |
| CDY57869 | Canola | nucleus | 19.32 | 22.17 |
| CDY04896 | Canola | nucleus | 18.94 | 22.03 |
| CDY71047 | Canola | nucleus | 18.94 | 21.74 |
| CDY37819 | Canola | nucleus | 25.38 | 21.61 |
| CDY33967 | Canola | nucleus | 25.38 | 21.61 |
| CDY69618 | Canola | nucleus | 24.62 | 21.31 |
| CDX70284 | Canola | nucleus | 18.56 | 21.3 |
| CDY10356 | Canola | nucleus | 18.56 | 21.3 |
| CDY67332 | Canola | nucleus | 24.24 | 20.98 |
| CDX70283 | Canola | nucleus | 16.67 | 20.09 |
| CDY27308 | Canola | nucleus | 17.42 | 20.09 |
| CDY42007 | Canola | nucleus | 16.29 | 19.63 |
| CDX80037 | Canola | nucleus | 18.56 | 19.29 |
| CDY41547 | Canola | nucleus | 18.18 | 18.9 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078GT55 | UniProt:A0A078GT55 | EnsemblPlants:CDY28696 | ProteinID:CDY28696 |
| ProteinID:CDY28696.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00041330001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF264 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE95C7 | : | : | : | : |
Description
BnaCnng05820DBnaCnng05820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT55]
Coordinates
chrLK032225:-:271645..273413
Molecular Weight (calculated)
30773.1 Da
IEP (calculated)
6.448
GRAVY (calculated)
-0.980
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPQHAFMF QQRHEDNSHD QLPSCPPPHL FNGGGNYMMN RSMSLMNVQE DHHQSVDHEE NLSDDGAHMM LGEKKKRLQL EQVKVLEKSF ELGNKLEPER
101: KIQLAKALGM QLRQIAIWFQ NRRARWKTRQ LERDYDSLKK QNFLLRLTEI ENSDTRTVMS LKNNDCNEGS IIKREAEASW SNNGSIENSS DINLEIPRET
201: TTTPVSTIKD LFPSSIRAST HHRQNHEMVQ EESLCNMFNG IEETTTDGYW AWSDPNHNNH RQFN
101: KIQLAKALGM QLRQIAIWFQ NRRARWKTRQ LERDYDSLKK QNFLLRLTEI ENSDTRTVMS LKNNDCNEGS IIKREAEASW SNNGSIENSS DINLEIPRET
201: TTTPVSTIKD LFPSSIRAST HHRQNHEMVQ EESLCNMFNG IEETTTDGYW AWSDPNHNNH RQFN
001: MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN
Arabidopsis Description
ATHB-20Homeobox-leucine zipper protein ATHB-20 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAT0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.