Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039135.1-P | Field mustard | nucleus | 81.82 | 86.03 |
| CDY69034 | Canola | nucleus | 78.67 | 83.96 |
| CDY69290 | Canola | nucleus | 72.73 | 83.2 |
| CDY28696 | Canola | nucleus | 76.57 | 82.95 |
| AT5G15150.1 | Thale cress | nucleus | 71.68 | 65.29 |
| KRG93515 | Soybean | nucleus | 49.65 | 48.63 |
| KRH01157 | Soybean | nucleus | 45.45 | 48.51 |
| KRH18490 | Soybean | nucleus | 49.3 | 48.45 |
| KRH40114 | Soybean | nucleus | 45.45 | 48.15 |
| PGSC0003DMT400017751 | Potato | nucleus | 36.01 | 45.78 |
| PGSC0003DMT400003586 | Potato | nucleus | 37.76 | 45.19 |
| AT1G26960.1 | Thale cress | nucleus | 40.21 | 45.1 |
| Solyc02g067410.1.1 | Tomato | nucleus | 40.21 | 43.73 |
| AT1G69780.1 | Thale cress | nucleus | 43.01 | 41.84 |
| Solyc02g087840.2.1 | Tomato | nucleus | 42.66 | 39.48 |
| AT3G01470.1 | Thale cress | nucleus | 27.97 | 29.41 |
| AT5G53980.1 | Thale cress | nucleus | 15.38 | 28.21 |
| AT2G36610.1 | Thale cress | nucleus | 18.18 | 28.11 |
| AT4G40060.1 | Thale cress | nucleus | 28.67 | 27.89 |
| AT2G22430.1 | Thale cress | nucleus | 29.37 | 27.01 |
| AT5G65310.1 | Thale cress | nucleus | 27.62 | 25.32 |
| AT3G61890.1 | Thale cress | nucleus | 18.88 | 22.98 |
| AT5G03790.1 | Thale cress | nucleus | 18.53 | 22.55 |
| AT2G46680.1 | Thale cress | nucleus | 19.23 | 21.32 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:821232 | ProteinID:AAF26152.1 | ProteinID:AEE73626.1 | EMBL:AK228890 |
| ArrayExpress:AT3G01220 | EnsemblPlantsGene:AT3G01220 | RefSeq:AT3G01220 | TAIR:AT3G01220 | RefSeq:AT3G01220-TAIR-G | EnsemblPlants:AT3G01220.1 |
| TAIR:AT3G01220.1 | Symbol:ATHB20 | EMBL:AY087631 | EMBL:BT029221 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | RefSeq:NP_186771.1 | PFAM:PF00046 | PFAM:PF02183 | PO:PO:0000017 | PO:PO:0000036 |
| PO:PO:0000230 | PO:PO:0001078 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF264 | UniProt:Q8LAT0 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI00000A3059 | : | : | : | : | : |
Description
ATHB-20Homeobox-leucine zipper protein ATHB-20 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAT0]
Coordinates
chr3:+:73307..75539
Molecular Weight (calculated)
33077.6 Da
IEP (calculated)
5.979
GRAVY (calculated)
-0.937
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.