Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75029 | Canola | nucleus | 65.95 | 65.24 |
| CDY33168 | Canola | nucleus | 66.49 | 65.08 |
| Bra005259.1-P | Field mustard | nucleus | 64.86 | 64.17 |
| KRH20007 | Soybean | nucleus | 47.57 | 39.82 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 45.95 | 38.64 |
| KRH32628 | Soybean | nucleus | 46.49 | 38.22 |
| AT5G03790.1 | Thale cress | nucleus | 45.41 | 35.74 |
| Solyc09g008810.2.1 | Tomato | nucleus | 44.86 | 34.44 |
| PGSC0003DMT400006949 | Potato | nucleus | 44.86 | 34.16 |
| AT5G53980.1 | Thale cress | nucleus | 20.54 | 24.36 |
| AT1G26960.1 | Thale cress | nucleus | 27.57 | 20.0 |
| AT3G61890.1 | Thale cress | nucleus | 24.32 | 19.15 |
| AT3G01470.1 | Thale cress | nucleus | 28.11 | 19.12 |
| AT5G15150.1 | Thale cress | nucleus | 32.43 | 19.11 |
| AT1G69780.1 | Thale cress | nucleus | 30.27 | 19.05 |
| AT2G22430.1 | Thale cress | nucleus | 31.89 | 18.97 |
| AT4G40060.1 | Thale cress | nucleus | 29.73 | 18.71 |
| AT5G65310.1 | Thale cress | nucleus | 30.81 | 18.27 |
| AT2G46680.1 | Thale cress | nucleus | 25.41 | 18.22 |
| AT3G01220.1 | Thale cress | nucleus | 28.11 | 18.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:818233 | ProteinID:AAD20137.2 | ProteinID:AAM15313.1 | ProteinID:AEC09273.1 |
| ArrayExpress:AT2G36610 | EnsemblPlantsGene:AT2G36610 | RefSeq:AT2G36610 | TAIR:AT2G36610 | RefSeq:AT2G36610-TAIR-G | EnsemblPlants:AT2G36610.1 |
| TAIR:AT2G36610.1 | Symbol:ATHB22 | ncoils:Coil | EMBL:DQ056569 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | RefSeq:NP_850266.1 | PFAM:PF00046 | PO:PO:0007131 | PO:PO:0009001 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF287 | UniProt:Q4PSR7 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00001623CB | SEG:seg | : | : |
Description
ATHB-22Homeobox-leucine zipper protein ATHB-22 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSR7]
Coordinates
chr2:+:15349211..15350290
Molecular Weight (calculated)
21833.0 Da
IEP (calculated)
9.122
GRAVY (calculated)
-0.927
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYWSSSFID GASSSSFISP FYNFDHFSGN QDNRCLGTMM GAQQDILHVP LAMVESGYGE ESNSFNGQEK KKKKMTSEQL KFLERSFQEE IKLNPDRKMK
101: LNPDRKMKLS KELGLQPRQI AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW EKACS
101: LNPDRKMKLS KELGLQPRQI AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW EKACS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.