Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37519 | Canola | nucleus | 73.9 | 77.31 |
| Bra039116.1-P | Field mustard | nucleus | 73.9 | 77.31 |
| CDY28673 | Canola | nucleus | 76.1 | 76.1 |
| CDY49056 | Canola | nucleus | 73.53 | 76.05 |
| Bra040519.1-P | Field mustard | nucleus | 75.74 | 75.18 |
| PGSC0003DMT400001322 | Potato | nucleus | 60.29 | 57.54 |
| VIT_14s0066g01440.t01 | Wine grape | nucleus | 57.35 | 57.14 |
| Solyc02g086930.2.1 | Tomato | nucleus | 59.19 | 56.49 |
| KRH20316 | Soybean | nucleus | 56.62 | 54.04 |
| KRG93337 | Soybean | nucleus | 52.57 | 53.56 |
| GSMUA_Achr5P05300_001 | Banana | nucleus | 36.03 | 47.57 |
| GSMUA_Achr9P14570_001 | Banana | nucleus | 45.96 | 47.53 |
| GSMUA_Achr3P06190_001 | Banana | nucleus | 44.49 | 42.76 |
| GSMUA_Achr9P18360_001 | Banana | nucleus | 42.28 | 40.64 |
| Zm00001d017920_P001 | Maize | nucleus | 48.53 | 40.0 |
| GSMUA_Achr8P25940_001 | Banana | nucleus | 41.18 | 39.02 |
| KXG30829 | Sorghum | nucleus | 48.9 | 39.0 |
| Zm00001d051749_P001 | Maize | nucleus | 48.16 | 38.64 |
| Os02t0729700-01 | Rice | nucleus | 48.16 | 38.19 |
| Zm00001d050310_P001 | Maize | nucleus | 37.87 | 37.87 |
| Zm00001d032316_P001 | Maize | nucleus | 37.5 | 37.78 |
| KXG25140 | Sorghum | nucleus | 37.87 | 37.45 |
| TraesCS6A01G290800.1 | Wheat | nucleus | 45.96 | 36.76 |
| TraesCS6B01G321100.1 | Wheat | nucleus | 45.96 | 36.44 |
| HORVU6Hr1G072810.7 | Barley | nucleus | 44.85 | 35.06 |
| TraesCS6D01G272000.1 | Wheat | nucleus | 45.59 | 33.16 |
| Os09t0379600-00 | Rice | nucleus | 25.37 | 32.86 |
| TraesCS5B01G197700.1 | Wheat | nucleus | 34.56 | 31.44 |
| TraesCS5D01G205000.1 | Wheat | nucleus | 34.56 | 31.44 |
| AT5G53980.1 | Thale cress | nucleus | 18.01 | 31.41 |
| TraesCS5A01G199300.1 | Wheat | nucleus | 33.82 | 30.67 |
| AT1G69780.1 | Thale cress | nucleus | 33.09 | 30.61 |
| Zm00001d005692_P001 | Maize | nucleus | 31.62 | 30.39 |
| Os08t0416000-01 | Rice | nucleus | 38.97 | 30.37 |
| AT4G40060.1 | Thale cress | nucleus | 32.35 | 29.93 |
| AT2G22430.1 | Thale cress | nucleus | 33.46 | 29.26 |
| AT1G26960.1 | Thale cress | nucleus | 26.47 | 28.24 |
| AT2G36610.1 | Thale cress | nucleus | 19.12 | 28.11 |
| HORVU5Hr1G059410.2 | Barley | nucleus | 33.82 | 28.05 |
| AT3G01220.1 | Thale cress | nucleus | 29.41 | 27.97 |
| AT5G15150.1 | Thale cress | nucleus | 31.99 | 27.71 |
| AT5G03790.1 | Thale cress | nucleus | 23.9 | 27.66 |
| AT5G65310.1 | Thale cress | nucleus | 31.25 | 27.24 |
| AT3G61890.1 | Thale cress | nucleus | 23.53 | 27.23 |
| EER98832 | Sorghum | nucleus | 31.62 | 27.13 |
| AT2G46680.1 | Thale cress | nucleus | 23.53 | 24.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:821138 | UniProt:A0A178VBZ2 | ProteinID:AAF01532.1 | ProteinID:AEE73670.1 |
| ArrayExpress:AT3G01470 | EnsemblPlantsGene:AT3G01470 | RefSeq:AT3G01470 | TAIR:AT3G01470 | RefSeq:AT3G01470-TAIR-G | EnsemblPlants:AT3G01470.1 |
| TAIR:AT3G01470.1 | Symbol:ATHB-1 | EMBL:AY058188 | EMBL:AY098972 | Unigene:At.47815 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006412 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009651 | GO:GO:0009653 | GO:GO:0009965 |
| GO:GO:0009987 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0042803 | GO:GO:0043565 | GO:GO:0045893 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| EMBL:M90416 | RefSeq:NP_186796.1 | ProteinID:OAP03877.1 | PFAM:PF00046 | PFAM:PF02183 | PO:PO:0000293 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF136 | UniProt:Q02283 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0000000E40 | EMBL:X58821 | SEG:seg | : | : |
Description
HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
Coordinates
chr3:-:182396..184403
Molecular Weight (calculated)
30934.7 Da
IEP (calculated)
4.537
GRAVY (calculated)
-0.823
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.