Factsheet for Os08t0416000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25140	Sorghum	nucleus	64.47	81.82
Zm00001d050310_P001	Maize	nucleus	62.18	79.78
Zm00001d032316_P001	Maize	nucleus	61.03	78.89
Os02t0729700-01	Rice	nucleus	47.56	48.4
GSMUA_Achr8P25940_001	Banana	nucleus	38.97	47.39
GSMUA_Achr9P18360_001	Banana	nucleus	37.54	46.29
VIT_14s0066g01440.t01	Wine grape	nucleus	34.67	44.32
Solyc02g086930.2.1	Tomato	nucleus	33.52	41.05
PGSC0003DMT400001322	Potato	nucleus	33.24	40.7
Bra039116.1-P	Field mustard	nucleus	29.51	39.62
CDY37519	Canola	nucleus	29.51	39.62
AT3G01470.1	Thale cress	nucleus	30.37	38.97
KRG93337	Soybean	nucleus	29.51	38.58
Os09t0379600-00	Rice	nucleus	23.21	38.57
CDY49056	Canola	nucleus	28.94	38.4
KRH20316	Soybean	nucleus	31.23	38.25
CDY28673	Canola	nucleus	29.51	37.87
Bra040519.1-P	Field mustard	nucleus	29.23	37.23
Os08t0481400-01	Rice	nucleus	26.07	33.83
Os09t0470500-01	Rice	nucleus	25.21	31.77
Os03t0188900-01	Rice	nucleus	26.65	29.9
Os02t0649300-01	Rice	nucleus	20.34	27.2
Os10t0377300-01	Rice	nucleus	22.06	25.25
Os09t0528200-01	Rice	nucleus	16.62	23.29
Os04t0541700-02	Rice	nucleus	18.05	22.83
Os10t0404900-01	Rice	nucleus	22.92	22.54
Os03t0170600-01	Rice	cytosol, nucleus	1.43	7.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4345576	EMBL:AK101569	ProteinID:BAC98578.1	ProteinID:BAF23721.1
ProteinID:BAT05434.1	ncoils:Coil	ProteinID:EAZ42740.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os08g0416000	EnsemblPlants:Os08t0416000-01	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF188	UniProt:Q6ZA74
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00001D6BA5	RefSeq:XP_015650258.1	SEG:seg	:

Description

HOMEOBOX GENE 5Homeodomain leucine zipper protein. (Os08t0416000-01);Similar to Homeobox-leucine zipper protein HOX5. (Os08t0416000-02)

Coordinates

chr8:-:19884020..19888355

Molecular Weight (calculated)

37388.6 Da

IEP (calculated)

4.332

GRAVY (calculated)

-0.552

Length

349 amino acids

Sequence
(BLAST)

001: MDPGRVVFDS GVARRACPGG AQMLLFGGGG SANSGGFFRG VPAAVLGMDE SRSSSSAAGA GAKRPFFTTH EELLEEEYYD EQAPEKKRRL TAEQVQMLER
101: SFEEENKLEP ERKTELARRL GMAPRQVAVW FQNRRARWKT KQLEHDFDRL KAAYDALAAD HHALLSDNDR LRAQVISLTE KLQDKETSPS SATITTAAQE
201: VDQPDEHTEA ASTTGFATVD GALAAPPPGH QQPPHKDDLV SSGGTNDDGD GGAAVVVFDV TEGANDRLSC ESAYFADAAE AYERDCAGHY ALSSEEEDGG
301: AVSDEGCSFD LPDAAAAAAA MFGAAGVVHH DAADDEEAQL GSWTAWFWS

Best Arabidopsis Sequence Match ( AT3G01470.1 )
(BLAST)

001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP

Arabidopsis Description

HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.