Factsheet for Os02t0649300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25089296

gfp PMID: 25089296 doi

X Huang, M Duan, J Liao, X Yuan, H Chen, J Feng, J Huang, HS Zhang

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017422_P001	Maize	nucleus	65.13	72.34
TraesCS6A01G240400.1	Wheat	nucleus	59.0	69.68
TraesCS6D01G222600.1	Wheat	nucleus	59.0	68.44
TraesCS6B01G284300.1	Wheat	nucleus	58.24	67.26
EES05814	Sorghum	nucleus	63.98	66.8
Os04t0541700-02	Rice	nucleus	53.26	50.36
HORVU6Hr1G061390.1	Barley	nucleus	59.77	49.06
VIT_16s0098g01170.t01	Wine grape	nucleus	30.65	35.56
VIT_02s0025g02590.t01	Wine grape	nucleus	26.05	35.42
GSMUA_Achr1P16280_001	Banana	nucleus	28.74	34.09
Os09t0528200-01	Rice	nucleus	32.18	33.73
Solyc08g083130.2.1	Tomato	extracellular, nucleus	24.52	32.65
PGSC0003DMT400047622	Potato	nucleus	26.44	32.24
Solyc03g082550.2.1	Tomato	nucleus	24.9	31.1
VIT_15s0048g02870.t01	Wine grape	nucleus	28.74	30.86
Solyc06g053220.2.1	Tomato	nucleus	24.9	28.89
CDX89136	Canola	nucleus	25.29	28.82
Os08t0481400-01	Rice	nucleus	29.5	28.62
Bra014417.1-P	Field mustard	nucleus	24.9	28.51
CDY71532	Canola	nucleus	24.9	28.51
Solyc01g096320.2.1	Tomato	nucleus	26.05	28.45
CDY41547	Canola	nucleus	27.59	28.35
PGSC0003DMT400013968	Potato	nucleus	24.14	28.0
KRH47840	Soybean	nucleus	25.29	27.73
AT3G61890.1	Thale cress	nucleus	24.9	27.66
Bra004516.1-P	Field mustard	nucleus	26.82	27.56
CDX80037	Canola	nucleus	26.82	27.56
CDX76591	Canola	nucleus	24.14	27.51
CDY27308	Canola	nucleus	24.14	27.51
PGSC0003DMT400000694	Potato	nucleus	26.44	27.38
AT2G46680.1	Thale cress	nucleus	26.82	27.13
KRH53589	Soybean	nucleus	26.05	27.09
Os09t0470500-01	Rice	nucleus	28.74	27.08
KRH64347	Soybean	nucleus	25.29	26.94
Bra039265.1-P	Field mustard	nucleus	23.37	26.64
KRH06407	Soybean	nucleus	24.9	26.53
CDY57869	Canola	nucleus	23.37	26.52
Bra007637.1-P	Field mustard	nucleus	23.37	26.52
Os09t0379600-00	Rice	nucleus	20.31	25.24
GSMUA_Achr1P18670_001	Banana	nucleus	27.97	25.17
Os03t0188900-01	Rice	nucleus	27.2	22.83
Os10t0377300-01	Rice	nucleus	25.29	21.64
Os02t0729700-01	Rice	nucleus	28.35	21.57
Os08t0416000-01	Rice	nucleus	27.2	20.34
Os10t0404900-01	Rice	nucleus	26.82	19.72
Os03t0170600-01	Rice	cytosol, nucleus	2.68	10.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4330155	EMBL:AK063685	UniProt:B7E8X8	ProteinID:BAD25576.1
ProteinID:BAF09496.1	ProteinID:BAS80041.1	ncoils:Coil	ProteinID:EEE57478.1	EMBL:EU847515	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os02g0649300	EnsemblPlants:Os02t0649300-01
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF341	UniProt:Q6H6S3	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00003B44D8	RefSeq:XP_015624138.1
SEG:seg	:	:	:	:	:

Description

HOMEOBOX GENE 24HD-ZIP I protein, Transcription activator, Stress response, Panicle development (Os02t0649300-01)

Coordinates

chr2:+:26143311..26144729

Molecular Weight (calculated)

28538.9 Da

IEP (calculated)

4.606

GRAVY (calculated)

-0.670

Length

261 amino acids

Sequence
(BLAST)

001: MESDCQFLVA PPQPHMYYDT AAAAVDEAQF LRQMVAAADH HAAAAGRGGG DGDGGGGGGG GGERKRRFTE EQVRSLETTF HARRAKLEPR EKAELARELG
101: LQPRQVAIWF QNKRARWRSK QIEHDYAALR AQYDALHARV ESLRQEKLAL ADQVDELRGK LNERQDQSGS CDGGGAEGDD DDKRNSVMNA SSSGLVEEDY
201: VSCLAVPVVD VSEDGSAACG GSSYEYDHHL DYLGGGQLPD PFCGMPDLWE IWPMVEWNAV A

Best Arabidopsis Sequence Match ( AT2G46680.1 )
(BLAST)

001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS

Arabidopsis Description

ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.