Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G222600.1 | Wheat | nucleus | 63.52 | 89.78 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 62.89 | 88.5 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 61.01 | 87.78 |
| Os02t0649300-01 | Rice | nucleus | 49.06 | 59.77 |
| Zm00001d017422_P001 | Maize | nucleus | 42.77 | 57.87 |
| EES05814 | Sorghum | nucleus | 43.4 | 55.2 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 44.03 | 52.63 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 22.96 | 33.18 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 25.79 | 32.8 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 22.64 | 32.0 |
| VIT_02s0025g02590.t01 | Wine grape | nucleus | 18.87 | 31.25 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 19.18 | 31.12 |
| Solyc03g082550.2.1 | Tomato | nucleus | 20.44 | 31.1 |
| PGSC0003DMT400047622 | Potato | nucleus | 20.13 | 29.91 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 21.7 | 28.4 |
| CDX76591 | Canola | nucleus | 20.44 | 28.38 |
| CDX89136 | Canola | nucleus | 20.44 | 28.38 |
| AT3G61890.1 | Thale cress | nucleus | 20.75 | 28.09 |
| Bra014417.1-P | Field mustard | nucleus | 20.13 | 28.07 |
| CDY71532 | Canola | nucleus | 20.13 | 28.07 |
| Bra007637.1-P | Field mustard | nucleus | 20.13 | 27.83 |
| CDY57869 | Canola | nucleus | 20.13 | 27.83 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 25.16 | 27.59 |
| Solyc06g053220.2.1 | Tomato | nucleus | 19.5 | 27.56 |
| Solyc01g096320.2.1 | Tomato | nucleus | 20.44 | 27.2 |
| HORVU5Hr1G070260.1 | Barley | nucleus | 22.64 | 26.97 |
| CDY41547 | Canola | nucleus | 21.38 | 26.77 |
| PGSC0003DMT400013968 | Potato | nucleus | 18.87 | 26.67 |
| CDY27308 | Canola | nucleus | 19.18 | 26.64 |
| KRH47840 | Soybean | nucleus | 19.81 | 26.47 |
| PGSC0003DMT400000694 | Potato | nucleus | 20.75 | 26.19 |
| KRH06407 | Soybean | nucleus | 20.13 | 26.12 |
| CDX80037 | Canola | nucleus | 20.75 | 25.98 |
| Bra004516.1-P | Field mustard | nucleus | 20.75 | 25.98 |
| AT2G46680.1 | Thale cress | nucleus | 21.07 | 25.97 |
| Bra039265.1-P | Field mustard | nucleus | 18.55 | 25.76 |
| KRH64347 | Soybean | nucleus | 18.87 | 24.49 |
| KRH53589 | Soybean | nucleus | 19.18 | 24.3 |
| HORVU4Hr1G075170.1 | Barley | nucleus | 16.67 | 20.7 |
| HORVU5Hr1G059410.2 | Barley | nucleus | 20.75 | 20.12 |
| HORVU4Hr1G078410.5 | Barley | nucleus, plastid | 19.81 | 19.15 |
| HORVU6Hr1G072810.7 | Barley | nucleus | 19.81 | 18.1 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 22.01 | 17.77 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | UniProt:A0A287UDM5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:HORVU6Hr1G061390 | EnsemblPlants:HORVU6Hr1G061390.1 | InterPro:HTH_motif | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF341 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI000B488933 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:411177802..411181585
Molecular Weight (calculated)
35763.0 Da
IEP (calculated)
7.881
GRAVY (calculated)
-0.728
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAHHVSRPG EAQVDLETDN HSVHMPAGHR PVARHLDGPI KRRRALIRAT CVHRPGIKPG RRTTFQMSQV HALAIACSSG VLSVTIRSRS RDGSEMESDC
101: QFLLPPPPRM YAAAGDDGQF LQQQQLSGGG GERKRRFTEE QVRSLESTFH ARRAKLEPRE KADLARELGL QPRQVAIWFQ NKRARWRTKQ LEQDFAELRA
201: HYDALHARVQ SLKQEKLTLA AQLEELKKKL NERHDQSASC GGSCAVADVD DKRNSFTSCA VEKDESAAPA GDVSDGSTPG WYEYDDHLAY AVDLHEPFCA
301: TPELWETSWP LVEWNSVA
101: QFLLPPPPRM YAAAGDDGQF LQQQQLSGGG GERKRRFTEE QVRSLESTFH ARRAKLEPRE KADLARELGL QPRQVAIWFQ NKRARWRTKQ LEQDFAELRA
201: HYDALHARVQ SLKQEKLTLA AQLEELKKKL NERHDQSASC GGSCAVADVD DKRNSFTSCA VEKDESAAPA GDVSDGSTPG WYEYDDHLAY AVDLHEPFCA
301: TPELWETSWP LVEWNSVA
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
Arabidopsis Description
ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.