Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013968 | Potato | nucleus | 95.11 | 95.11 |
| Solyc03g082550.2.1 | Tomato | nucleus | 51.11 | 55.02 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 39.11 | 39.11 |
| Solyc01g096320.2.1 | Tomato | nucleus | 40.0 | 37.66 |
| KRH64347 | Soybean | nucleus | 40.0 | 36.73 |
| KRH53589 | Soybean | nucleus | 40.0 | 35.86 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 30.67 | 35.2 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 31.56 | 32.27 |
| Zm00001d006195_P001 | Maize | nucleus | 34.67 | 31.97 |
| Zm00001d021268_P001 | Maize | nucleus | 33.33 | 31.38 |
| EER99231 | Sorghum | nucleus | 33.78 | 31.28 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 33.78 | 30.4 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 33.33 | 30.12 |
| Os09t0528200-01 | Rice | nucleus | 32.89 | 29.72 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 32.89 | 29.72 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 32.89 | 29.72 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 28.44 | 28.96 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 28.44 | 28.44 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 36.0 | 27.93 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 28.0 | 27.88 |
| Zm00001d017422_P001 | Maize | nucleus | 28.44 | 27.23 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 28.89 | 26.75 |
| EES05814 | Sorghum | nucleus | 29.33 | 26.4 |
| Zm00001d002799_P001 | Maize | nucleus | 30.22 | 26.05 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 29.33 | 25.38 |
| Solyc07g062790.1.1 | Tomato | nucleus | 19.56 | 25.29 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 29.78 | 25.28 |
| EES11198 | Sorghum | nucleus | 30.22 | 25.19 |
| Zm00001d025964_P001 | Maize | nucleus | 29.78 | 25.0 |
| Os02t0649300-01 | Rice | nucleus | 28.89 | 24.9 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 29.33 | 24.81 |
| Solyc01g010600.2.1 | Tomato | nucleus | 26.67 | 24.69 |
| Os04t0541700-02 | Rice | nucleus | 29.78 | 24.28 |
| Solyc02g067410.1.1 | Tomato | nucleus | 24.44 | 20.91 |
| Solyc05g051460.2.1 | Tomato | nucleus | 28.89 | 20.77 |
| Solyc02g077590.1.1 | Tomato | nucleus | 16.44 | 20.67 |
| Solyc02g086930.2.1 | Tomato | nucleus | 25.33 | 20.0 |
| Solyc09g008810.2.1 | Tomato | nucleus | 21.33 | 19.92 |
| Solyc04g005800.2.1 | Tomato | nucleus | 26.22 | 19.87 |
| Solyc05g007180.2.1 | Tomato | nucleus | 26.67 | 19.67 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 27.56 | 19.5 |
| Solyc02g087840.2.1 | Tomato | nucleus | 26.67 | 19.42 |
| Solyc05g006980.2.1 | Tomato | nucleus | 24.44 | 19.1 |
| Solyc11g010270.1.1 | Tomato | nucleus | 29.33 | 18.86 |
| Solyc04g074700.2.1 | Tomato | nucleus | 24.44 | 17.74 |
| Solyc03g113270.2.1 | Tomato | nucleus, plastid | 24.89 | 17.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| UniProt:K4C609 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc06g053220.2 |
| EnsemblPlants:Solyc06g053220.2.1 | UniParc:UPI0002767494 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:-:35949767..35951001
Molecular Weight (calculated)
26363.5 Da
IEP (calculated)
4.725
GRAVY (calculated)
-1.058
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVAEDSSPV ECSKKKSHED GKRFSDEQVK VLESMFNQKT KLEPSKKLEL ARDLGLQPRQ VAIWFQNRRA RWKTKQLEHE YRRLKDEFDN LAMKFESLKK
101: EKESLLKQLQ ELSDQMENNH AGCSRSQDSI DSEIYTSSEN IEAEVDVKNN IPVCINTSLD HNRIKGTDSD REGTLFEHLR WKEEEEFWNM EELGDSSLGS
201: PEHWYAVGPG DSFDLSCENS KWWEL
101: EKESLLKQLQ ELSDQMENNH AGCSRSQDSI DSEIYTSSEN IEAEVDVKNN IPVCINTSLD HNRIKGTDSD REGTLFEHLR WKEEEEFWNM EELGDSSLGS
201: PEHWYAVGPG DSFDLSCENS KWWEL
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.