Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002259 | Potato | nucleus | 89.3 | 92.34 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 64.61 | 55.09 |
| KRG99129 | Soybean | nucleus | 62.55 | 54.48 |
| KRH74821 | Soybean | nucleus | 63.79 | 53.26 |
| KRH69308 | Soybean | nucleus | 63.79 | 52.54 |
| KRH45876 | Soybean | nucleus | 60.49 | 52.5 |
| Solyc05g007180.2.1 | Tomato | nucleus | 65.84 | 52.46 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 55.14 | 47.35 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 53.09 | 46.74 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 44.44 | 46.55 |
| KRG99070 | Soybean | nucleus | 32.92 | 46.51 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 55.14 | 45.89 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 44.44 | 45.76 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 49.79 | 45.49 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 54.32 | 45.05 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 51.85 | 44.84 |
| GSMUA_Achr10P... | Banana | nucleus | 52.26 | 44.41 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 51.44 | 44.17 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 50.62 | 43.93 |
| Solyc02g067410.1.1 | Tomato | nucleus | 46.09 | 42.59 |
| Solyc02g087840.2.1 | Tomato | nucleus | 48.56 | 38.19 |
| TraesCS4B01G287600.1 | Wheat | nucleus | 51.85 | 38.07 |
| Zm00001d027852_P001 | Maize | nucleus | 53.09 | 37.5 |
| TraesCS4D01G286400.2 | Wheat | nucleus | 51.85 | 37.17 |
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 51.44 | 36.98 |
| EER92780 | Sorghum | nucleus | 53.5 | 36.62 |
| Zm00001d048312_P001 | Maize | nucleus | 50.21 | 35.47 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 51.85 | 31.98 |
| HORVU4Hr1G075170.1 | Barley | nucleus | 33.33 | 31.64 |
| Zm00001d014201_P001 | Maize | nucleus | 45.27 | 31.61 |
| Solyc02g077590.1.1 | Tomato | nucleus | 23.05 | 31.28 |
| EER94272 | Sorghum | nucleus | 46.5 | 31.22 |
| Os10t0404900-01 | Rice | nucleus | 44.44 | 30.42 |
| Zm00001d033005_P001 | Maize | nucleus | 44.03 | 29.48 |
| Solyc07g062790.1.1 | Tomato | nucleus | 20.99 | 29.31 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 22.63 | 28.06 |
| Solyc06g053220.2.1 | Tomato | nucleus | 24.69 | 26.67 |
| Solyc04g005800.2.1 | Tomato | nucleus | 32.51 | 26.6 |
| Solyc02g086930.2.1 | Tomato | nucleus | 30.86 | 26.32 |
| Solyc05g006980.2.1 | Tomato | nucleus | 30.86 | 26.04 |
| Solyc03g082550.2.1 | Tomato | nucleus | 22.22 | 25.84 |
| Solyc09g008810.2.1 | Tomato | nucleus | 25.51 | 25.73 |
| Solyc01g096320.2.1 | Tomato | nucleus | 24.69 | 25.1 |
| Solyc05g051460.2.1 | Tomato | nucleus | 31.28 | 24.28 |
| Solyc03g113270.2.1 | Tomato | nucleus, plastid | 30.04 | 22.6 |
| Solyc11g010270.1.1 | Tomato | nucleus | 30.86 | 21.43 |
| Solyc04g074700.2.1 | Tomato | nucleus | 24.28 | 19.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:K4ATQ4 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc01g010600.2 | EnsemblPlants:Solyc01g010600.2.1 |
| UniParc:UPI0002761CF1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:5607104..5611257
Molecular Weight (calculated)
28293.3 Da
IEP (calculated)
6.584
GRAVY (calculated)
-0.928
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSCNNEMDF FPTNLMQHTP HEDNHQDHFH GVTSFLGKRS MSFSSKCDDQ NHGDQEDVLS DDGTHHEAIL REKKIRRLNM EQVKTLEMNF ELGNKLESER
101: KIQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKHYDVLKR EFDVIKSQNE ALLAHNNKLQ AEIMTLKNGK GPTESINLNK ETDQGSICST RSENSTEIMK
201: LQCNNMKLMD QTVKEETLSN IFCGIDDNSS GFWPWLDQQP HFN
101: KIQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKHYDVLKR EFDVIKSQNE ALLAHNNKLQ AEIMTLKNGK GPTESINLNK ETDQGSICST RSENSTEIMK
201: LQCNNMKLMD QTVKEETLSN IFCGIDDNSS GFWPWLDQQP HFN
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Arabidopsis Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.