CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45876	Soybean	nucleus	97.49	97.14
KRG99070	Soybean	nucleus	55.56	90.12
KRH74821	Soybean	nucleus	88.89	85.22
KRH69308	Soybean	nucleus	88.53	83.73
VIT_01s0026g01950.t01	Wine grape	nucleus	82.8	81.05
Solyc05g007180.2.1	Tomato	nucleus	78.49	71.8
PGSC0003DMT400065805	Potato	nucleus	78.14	71.24
PGSC0003DMT400002259	Potato	nucleus	55.91	66.38
VIT_14s0108g00390.t01	Wine grape	nucleus	66.67	65.72
AT1G69780.1	Thale cress	nucleus	66.67	63.27
CDY44091	Canola	nucleus	60.22	63.16
Solyc01g010600.2.1	Tomato	nucleus	54.48	62.55
Bra007881.1-P	Field mustard	nucleus	63.8	62.46
CDY38759	Canola	nucleus	62.72	61.62
CDY11659	Canola	nucleus	63.08	61.11
Bra016266.1-P	Field mustard	nucleus	63.08	61.11
GSMUA_Achr6P36450_001	Banana	nucleus	49.46	59.48
CDY70870	Canola	nucleus	64.16	59.47
CDY23547	Canola	nucleus	59.5	59.29
GSMUA_Achr7P11600_001	Banana	nucleus	57.71	58.33
GSMUA_Achr1P12270_001	Banana	nucleus	60.22	57.34
GSMUA_Achr7P20950_001	Banana	nucleus	48.39	57.2
Bra003980.1-P	Field mustard	nucleus	51.61	57.14
CDY48391	Canola	nucleus	51.61	57.14
GSMUA_Achr3P21430_001	Banana	nucleus	54.48	57.14
KRH40114	Soybean	nucleus	55.2	57.04
GSMUA_Achr1P21620_001	Banana	nucleus	57.35	56.94
GSMUA_Achr4P00550_001	Banana	nucleus	56.63	56.43
GSMUA_Achr10P...	Banana	nucleus	56.99	55.59
GSMUA_Achr2P07420_001	Banana	nucleus	58.06	55.48
KRG93515	Soybean	nucleus	57.35	54.79
KRH18490	Soybean	nucleus	56.99	54.64
KRH01157	Soybean	nucleus	51.97	54.1
GSMUA_Achr6P10660_001	Banana	nucleus	53.76	53.0
TraesCS4B01G287600.1	Wheat	nucleus	58.06	48.94
TraesCS4D01G286400.2	Wheat	nucleus	58.06	47.79
Zm00001d027852_P001	Maize	nucleus	58.42	47.38
TraesCS4A01G016600.1	Wheat	nucleus, plastid	56.99	47.04
EER92780	Sorghum	nucleus	59.5	46.76
Zm00001d048312_P001	Maize	nucleus	55.91	45.35
HORVU4Hr1G075180.3	Barley	nucleus, plastid	57.71	40.86
Os10t0404900-01	Rice	nucleus	49.1	38.59
Zm00001d014201_P001	Maize	nucleus	46.95	37.64
EER94272	Sorghum	nucleus	48.39	37.29
HORVU4Hr1G075170.1	Barley	nucleus	34.05	37.11
KRG96107	Soybean	nucleus	25.81	33.64
Zm00001d033005_P001	Maize	nucleus	43.73	33.61
KRH67812	Soybean	nucleus	25.45	30.47
KRH20007	Soybean	nucleus	23.66	29.86
KRH31331	Soybean	nucleus	33.33	29.62
KRH59287	Soybean	nucleus	31.9	28.99
KRG93337	Soybean	nucleus	27.6	28.84
KRH20316	Soybean	nucleus	29.39	28.77
KRG97544	Soybean	nucleus	32.97	28.57
KRH43132	Soybean	nucleus	31.9	28.53
KRH32628	Soybean	nucleus	22.94	28.44
KRH54501	Soybean	nucleus, plastid	32.62	27.91
KRH45836	Soybean	nucleus	31.9	27.81
KRH69374	Soybean	nucleus	33.33	26.96
KRH74760	Soybean	nucleus	32.97	26.67
KRH56963	Soybean	nucleus, plastid	31.54	26.59
KRG99178	Soybean	nucleus	30.82	26.54
KRH64347	Soybean	nucleus	23.3	26.53
KRH55168	Soybean	nucleus	19.0	26.5
KRH03417	Soybean	nucleus, plastid	31.18	26.44
KRH47840	Soybean	nucleus	22.22	26.05
KRH53589	Soybean	nucleus	22.94	25.5
KRH26193	Soybean	nucleus	17.56	25.39
KRH06407	Soybean	nucleus	21.51	24.49
KRH63409	Soybean	nucleus, plastid	21.86	22.93

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EMBL:ACUP02010970	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G123500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	UniProt:I1N172	InterPro:IPR001356	EnsemblPlants:KRG99129	ProteinID:KRG99129	ProteinID:KRG99129.1
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF176	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000233E6E9	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:15898792..15901216

Molecular Weight (calculated)

31695.1 Da

IEP (calculated)

5.744

GRAVY (calculated)

-0.872

Length

279 amino acids

Sequence
(BLAST)

001: MAFFPANFML QTPHQDDHQP PPSLNSIITS CAPQEYHGGA SFLGKRSMSF SGIELGEEAN AEEDLSDDGS QAGEKKRRLN MEQVKTLEKS FELGNKLEPE
101: RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDLLK RQYDAIKADN DALQAQNQKL QTEILALKNR EPTESINLNK ETEGSSSNRS ENSSEIKLDI
201: SRTPAIDSPL STQQSNSRTL FPSSARPTGV AQLFQTTPRP EIQCQKIDHM VKEESLSNMF CGIDDQSGLW PWLEQQHFN

Best Arabidopsis Sequence Match ( AT5G15150.1 )
(BLAST)

001: MYMYEEERNN INNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTTNN MNDQDQVGEE
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN

Arabidopsis Description

HAT7Homeobox-leucine zipper protein HAT7 [Source:UniProtKB/Swiss-Prot;Acc:Q00466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.