Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016266.1-P | Field mustard | nucleus | 98.96 | 98.96 |
| CDY38759 | Canola | nucleus | 97.22 | 98.59 |
| AT1G69780.1 | Thale cress | nucleus | 92.71 | 90.82 |
| CDY44091 | Canola | nucleus | 81.6 | 88.35 |
| CDY23547 | Canola | nucleus | 84.38 | 86.79 |
| CDY70870 | Canola | nucleus | 88.89 | 85.05 |
| CDY48391 | Canola | nucleus | 73.61 | 84.13 |
| CDY46427 | Canola | nucleus | 63.19 | 71.65 |
| CDY52767 | Canola | nucleus | 63.19 | 71.65 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 65.28 | 65.96 |
| KRG99129 | Soybean | nucleus | 61.11 | 63.08 |
| KRH74821 | Soybean | nucleus | 63.19 | 62.54 |
| KRH45876 | Soybean | nucleus | 60.76 | 62.5 |
| KRH69308 | Soybean | nucleus | 63.54 | 62.03 |
| Solyc05g007180.2.1 | Tomato | nucleus | 62.15 | 58.69 |
| PGSC0003DMT400065805 | Potato | nucleus | 62.15 | 58.5 |
| KRG99070 | Soybean | nucleus | 31.94 | 53.49 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 50.35 | 52.54 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 50.35 | 51.6 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 50.0 | 51.43 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 41.32 | 51.29 |
| GSMUA_Achr10P... | Banana | nucleus | 50.69 | 51.05 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 51.74 | 51.03 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 50.0 | 50.88 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 41.32 | 50.42 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 51.04 | 50.17 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 48.61 | 49.47 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 45.49 | 49.25 |
| Zm00001d027852_P001 | Maize | nucleus | 54.51 | 45.64 |
| TraesCS4B01G287600.1 | Wheat | nucleus | 52.08 | 45.32 |
| CDY69034 | Canola | nucleus | 41.67 | 44.78 |
| EER92780 | Sorghum | nucleus | 54.86 | 44.51 |
| CDY69290 | Canola | nucleus | 38.54 | 44.4 |
| TraesCS4D01G286400.2 | Wheat | nucleus | 52.08 | 44.25 |
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 51.39 | 43.79 |
| Zm00001d048312_P001 | Maize | nucleus | 51.39 | 43.02 |
| CDY48942 | Canola | nucleus | 23.96 | 42.59 |
| CDX78614 | Canola | nucleus | 43.4 | 41.53 |
| CDY28696 | Canola | nucleus | 37.15 | 40.53 |
| CDX70596 | Canola | nucleus | 42.71 | 40.46 |
| CDX69546 | Canola | nucleus | 42.71 | 39.81 |
| CDX85054 | Canola | nucleus | 42.36 | 39.74 |
| CDY70306 | Canola | nucleus | 39.24 | 38.7 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 52.08 | 38.07 |
| CDX67451 | Canola | nucleus | 22.92 | 37.08 |
| CDY11680 | Canola | nucleus | 22.92 | 37.08 |
| Os10t0404900-01 | Rice | nucleus | 43.75 | 35.49 |
| Zm00001d014201_P001 | Maize | nucleus | 42.36 | 35.06 |
| EER94272 | Sorghum | nucleus | 43.75 | 34.81 |
| HORVU4Hr1G075170.1 | Barley | nucleus | 30.21 | 33.98 |
| Zm00001d033005_P001 | Maize | nucleus | 42.01 | 33.33 |
| CDX99719 | Canola | nucleus | 20.83 | 30.77 |
| CDY28673 | Canola | nucleus | 28.47 | 30.15 |
| CDY69536 | Canola | nucleus | 16.32 | 30.13 |
| CDY28803 | Canola | nucleus | 16.32 | 30.13 |
| CDY37519 | Canola | nucleus | 26.74 | 29.62 |
| CDY49056 | Canola | nucleus | 26.74 | 29.28 |
| CDY33168 | Canola | nucleus | 19.1 | 29.1 |
| CDY25596 | Canola | nucleus | 26.74 | 28.95 |
| CDX75029 | Canola | nucleus | 18.4 | 28.34 |
| CDX69357 | Canola | nucleus | 28.82 | 28.14 |
| CDY71532 | Canola | nucleus | 21.88 | 27.63 |
| CDY69618 | Canola | nucleus | 29.17 | 27.54 |
| CDY67332 | Canola | nucleus | 29.17 | 27.54 |
| CDX75697 | Canola | nucleus | 28.12 | 27.46 |
| CDY25597 | Canola | nucleus | 28.47 | 27.42 |
| CDY39476 | Canola | nucleus | 26.74 | 27.3 |
| CDY37819 | Canola | nucleus | 29.17 | 27.1 |
| CDY33967 | Canola | nucleus | 29.17 | 27.1 |
| CDX76923 | Canola | nucleus | 29.17 | 27.1 |
| CDX89467 | Canola | nucleus | 28.12 | 27.0 |
| CDY13761 | Canola | nucleus | 28.82 | 26.69 |
| CDX90376 | Canola | nucleus | 26.39 | 26.67 |
| CDX89136 | Canola | nucleus | 21.18 | 26.64 |
| CDY11269 | Canola | nucleus | 19.44 | 25.69 |
| CDX80887 | Canola | nucleus | 19.1 | 25.23 |
| CDY04896 | Canola | nucleus | 19.79 | 25.11 |
| CDX76591 | Canola | nucleus | 19.79 | 24.89 |
| CDY57869 | Canola | nucleus | 19.79 | 24.78 |
| CDY27308 | Canola | nucleus | 19.44 | 24.45 |
| CDX80037 | Canola | nucleus | 21.53 | 24.41 |
| CDY41547 | Canola | nucleus | 21.18 | 24.02 |
| CDY10356 | Canola | nucleus | 19.1 | 23.91 |
| CDY71047 | Canola | nucleus | 19.1 | 23.91 |
| CDX70284 | Canola | nucleus | 19.1 | 23.91 |
| CDX70283 | Canola | nucleus | 18.06 | 23.74 |
| CDY42007 | Canola | nucleus | 18.06 | 23.74 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078FFC7 | UniProt:A0A078FFC7 | EnsemblPlants:CDY11659 | ProteinID:CDY11659 |
| ProteinID:CDY11659.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00049804001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEAFF2 | SEG:seg |
Description
BnaC06g30800DBnaC06g30800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFC7]
Coordinates
chrLK032012:-:875672..877050
Molecular Weight (calculated)
32489.1 Da
IEP (calculated)
5.606
GRAVY (calculated)
-0.775
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQAPS LAPLLPSCSI PQDLHGFASF LGKRSPIEVG NNMNGEEDYS DDGSHMGEKK RRLNMEQVKT LEKTFELGNK
101: LEPEMKMQLA RALGLQPRQI AIWFQNRRAR WKTKQLEKDY DTLKQQVDAL KADNELLQTH NQKLQAEIMG LKNKEQIESI NLNKETEGSC SNRSDNSSDN
201: LRLDISTALP SVDSTITAGH PPAPQTVGRH FFPPSPAVAT TTTTTMQFFQ NSSSGQSMVK EENSISNMLC AMDDHSGFWP WLDQQQYN
101: LEPEMKMQLA RALGLQPRQI AIWFQNRRAR WKTKQLEKDY DTLKQQVDAL KADNELLQTH NQKLQAEIMG LKNKEQIESI NLNKETEGSC SNRSDNSSDN
201: LRLDISTALP SVDSTITAGH PPAPQTVGRH FFPPSPAVAT TTTTTMQFFQ NSSSGQSMVK EENSISNMLC AMDDHSGFWP WLDQQQYN
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Arabidopsis Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.