Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011808.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX69357 | Canola | nucleus | 97.97 | 97.97 |
| AT4G40060.1 | Thale cress | nucleus | 85.76 | 86.05 |
| CDX90376 | Canola | nucleus | 80.68 | 83.51 |
| CDY39476 | Canola | nucleus | 79.32 | 82.98 |
| CDY25596 | Canola | nucleus | 64.75 | 71.8 |
| CDY25597 | Canola | nucleus | 72.2 | 71.24 |
| CDX89467 | Canola | nucleus | 71.53 | 70.33 |
| CDX76923 | Canola | nucleus | 73.22 | 69.68 |
| CDY13761 | Canola | nucleus | 72.54 | 68.81 |
| CDX99719 | Canola | nucleus | 37.63 | 56.92 |
| CDY48942 | Canola | nucleus | 31.19 | 56.79 |
| KRH59287 | Soybean | nucleus | 49.15 | 47.23 |
| KRH43132 | Soybean | nucleus | 49.15 | 46.47 |
| KRH31331 | Soybean | nucleus | 49.15 | 46.18 |
| KRG97544 | Soybean | nucleus | 49.83 | 45.65 |
| Solyc05g051460.2.1 | Tomato | nucleus | 47.12 | 44.41 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 48.81 | 42.99 |
| PGSC0003DMT400043251 | Potato | nucleus | 47.12 | 42.77 |
| CDY69618 | Canola | nucleus | 44.07 | 42.62 |
| CDY37819 | Canola | nucleus | 44.75 | 42.58 |
| CDY67332 | Canola | nucleus | 43.73 | 42.3 |
| CDY33967 | Canola | nucleus | 44.07 | 41.94 |
| PGSC0003DMT400041655 | Potato | nucleus | 48.81 | 41.38 |
| Solyc11g010270.1.1 | Tomato | nucleus | 48.47 | 40.86 |
| CDY11680 | Canola | nucleus | 24.41 | 40.45 |
| CDX67451 | Canola | nucleus | 23.73 | 39.33 |
| CDY49056 | Canola | nucleus | 29.15 | 32.7 |
| CDY28803 | Canola | nucleus | 17.29 | 32.69 |
| CDY37519 | Canola | nucleus | 28.81 | 32.69 |
| CDY28673 | Canola | nucleus | 29.83 | 32.35 |
| CDY69290 | Canola | nucleus | 27.12 | 32.0 |
| CDY69536 | Canola | nucleus | 16.61 | 31.41 |
| CDY33168 | Canola | nucleus | 20.0 | 31.22 |
| CDX75029 | Canola | nucleus | 19.66 | 31.02 |
| CDY69034 | Canola | nucleus | 27.8 | 30.6 |
| CDY48391 | Canola | nucleus | 25.42 | 29.76 |
| CDY44091 | Canola | nucleus | 26.44 | 29.32 |
| CDY46427 | Canola | nucleus | 24.75 | 28.74 |
| CDY23547 | Canola | nucleus | 27.12 | 28.57 |
| CDY38759 | Canola | nucleus | 27.46 | 28.52 |
| CDY52767 | Canola | nucleus | 24.41 | 28.35 |
| CDY11659 | Canola | nucleus | 27.46 | 28.12 |
| CDY28696 | Canola | nucleus | 25.08 | 28.03 |
| CDY70870 | Canola | nucleus | 27.8 | 27.24 |
| CDY70306 | Canola | nucleus | 26.78 | 27.05 |
| CDX78614 | Canola | nucleus | 27.46 | 26.91 |
| CDX69546 | Canola | nucleus | 27.8 | 26.54 |
| CDY57869 | Canola | nucleus | 20.68 | 26.52 |
| CDX85054 | Canola | nucleus | 27.46 | 26.38 |
| CDX70596 | Canola | nucleus | 27.12 | 26.32 |
| CDX80887 | Canola | nucleus | 19.32 | 26.15 |
| CDY71532 | Canola | nucleus | 20.0 | 25.88 |
| CDY27308 | Canola | nucleus | 20.0 | 25.76 |
| CDX76591 | Canola | nucleus | 20.0 | 25.76 |
| CDX89136 | Canola | nucleus | 19.66 | 25.33 |
| CDY11269 | Canola | nucleus | 18.64 | 25.23 |
| CDY04896 | Canola | nucleus | 19.32 | 25.11 |
| CDX80037 | Canola | nucleus | 21.36 | 24.8 |
| CDY41547 | Canola | nucleus | 21.36 | 24.8 |
| CDX70283 | Canola | nucleus | 18.31 | 24.66 |
| CDY42007 | Canola | nucleus | 18.31 | 24.66 |
| CDX70284 | Canola | nucleus | 18.31 | 23.48 |
| CDY71047 | Canola | nucleus | 18.31 | 23.48 |
| CDY10356 | Canola | nucleus | 18.31 | 23.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078CFY7 | EnsemblPlants:CDX75697 | ProteinID:CDX75697 | ProteinID:CDX75697.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00121635001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF196 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002546242 |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g00050D
Coordinates
chrLK031804:+:2399943..2401579
Molecular Weight (calculated)
33434.4 Da
IEP (calculated)
4.645
GRAVY (calculated)
-0.983
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKRLSSSDS MCGLVSNSPD EQSPRGYGSN FQSMLDGYEE DGTIVEEYSG NHHHMGLSEK KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ
101: VAVWFQNRRA RWKTKQLEKD YGLLKSQYDS LRHNFDSLRR DNDSLLQEIS KMKGKINGED EDNNNVKATT ESDISAVKEE EDPMPSSPPQ FLEHSTGFNY
201: RRSFTDLRDL MPNPVVEAGS SDSCDSSAVL NEETSSENGR LTPPPPATVA GGSFLQFVKT EDHDEFFSGE EACGGFFSDE QPPSLNWYSA SDHWT
101: VAVWFQNRRA RWKTKQLEKD YGLLKSQYDS LRHNFDSLRR DNDSLLQEIS KMKGKINGED EDNNNVKATT ESDISAVKEE EDPMPSSPPQ FLEHSTGFNY
201: RRSFTDLRDL MPNPVVEAGS SDSCDSSAVL NEETSSENGR LTPPPPATVA GGSFLQFVKT EDHDEFFSGE EACGGFFSDE QPPSLNWYSA SDHWT
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
Arabidopsis Description
ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.