Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009510.1-P | Field mustard | nucleus | 97.83 | 97.83 |
| CDX70284 | Canola | nucleus | 97.83 | 97.83 |
| CDY10356 | Canola | nucleus | 97.83 | 97.83 |
| AT5G03790.1 | Thale cress | nucleus | 84.78 | 82.98 |
| CDY04896 | Canola | nucleus | 81.74 | 82.82 |
| CDY11269 | Canola | nucleus | 77.39 | 81.65 |
| CDX80887 | Canola | nucleus | 77.39 | 81.65 |
| CDX70283 | Canola | nucleus | 64.35 | 67.58 |
| CDY42007 | Canola | nucleus | 63.04 | 66.21 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 46.09 | 48.18 |
| PGSC0003DMT400006949 | Potato | nucleus | 46.09 | 43.62 |
| Solyc09g008810.2.1 | Tomato | nucleus | 45.65 | 43.57 |
| CDX75029 | Canola | nucleus | 33.48 | 41.18 |
| CDY33168 | Canola | nucleus | 33.48 | 40.74 |
| CDY48942 | Canola | nucleus | 23.48 | 33.33 |
| CDY69536 | Canola | nucleus | 20.0 | 29.49 |
| CDY28803 | Canola | nucleus | 19.57 | 28.85 |
| CDX67451 | Canola | nucleus | 22.17 | 28.65 |
| CDY11680 | Canola | nucleus | 22.17 | 28.65 |
| CDY71532 | Canola | nucleus | 23.04 | 23.25 |
| CDX89136 | Canola | nucleus | 23.04 | 23.14 |
| CDX99719 | Canola | nucleus | 19.57 | 23.08 |
| CDY69290 | Canola | nucleus | 24.78 | 22.8 |
| CDX76591 | Canola | nucleus | 22.17 | 22.27 |
| CDY57869 | Canola | nucleus | 22.17 | 22.17 |
| CDY46427 | Canola | nucleus | 24.35 | 22.05 |
| CDY52767 | Canola | nucleus | 24.35 | 22.05 |
| CDY41547 | Canola | nucleus | 23.48 | 21.26 |
| CDY70306 | Canola | nucleus | 26.96 | 21.23 |
| CDY69618 | Canola | nucleus | 27.83 | 20.98 |
| CDY28673 | Canola | nucleus | 24.78 | 20.96 |
| CDY69034 | Canola | nucleus | 24.35 | 20.9 |
| CDX80037 | Canola | nucleus | 23.04 | 20.87 |
| CDX70596 | Canola | nucleus | 27.39 | 20.72 |
| CDX78614 | Canola | nucleus | 26.96 | 20.6 |
| CDY37519 | Canola | nucleus | 23.04 | 20.38 |
| CDY67332 | Canola | nucleus | 26.96 | 20.33 |
| CDY25596 | Canola | nucleus | 23.48 | 20.3 |
| CDX85054 | Canola | nucleus | 26.96 | 20.2 |
| CDY49056 | Canola | nucleus | 23.04 | 20.15 |
| CDY27308 | Canola | nucleus | 20.0 | 20.09 |
| CDX69546 | Canola | nucleus | 26.96 | 20.06 |
| CDY33967 | Canola | nucleus | 26.96 | 20.0 |
| CDY37819 | Canola | nucleus | 26.96 | 20.0 |
| CDY44091 | Canola | nucleus | 23.04 | 19.92 |
| CDY48391 | Canola | nucleus | 21.74 | 19.84 |
| CDY38759 | Canola | nucleus | 23.91 | 19.37 |
| CDY11659 | Canola | nucleus | 23.91 | 19.1 |
| CDY25597 | Canola | nucleus | 24.78 | 19.06 |
| CDY28696 | Canola | nucleus | 21.74 | 18.94 |
| CDY23547 | Canola | nucleus | 23.04 | 18.93 |
| CDY39476 | Canola | nucleus | 23.04 | 18.79 |
| CDX76923 | Canola | nucleus | 25.22 | 18.71 |
| CDX89467 | Canola | nucleus | 24.35 | 18.67 |
| CDY70870 | Canola | nucleus | 24.35 | 18.6 |
| CDY13761 | Canola | nucleus | 24.78 | 18.33 |
| CDX69357 | Canola | nucleus | 23.48 | 18.31 |
| CDX75697 | Canola | nucleus | 23.48 | 18.31 |
| CDX90376 | Canola | nucleus | 21.3 | 17.19 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078JZE9 | UniProt:A0A078JZE9 | EnsemblPlants:CDY71047 | ProteinID:CDY71047 |
| ProteinID:CDY71047.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00010767001 |
| InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF287 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE519F | SEG:seg | : | : | : |
Description
BnaCnng71060DBnaCnng71060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZE9]
Coordinates
chrLK044262:-:1037..2424
Molecular Weight (calculated)
26536.4 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.763
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWTTTRNLE NVRVAFMPPP WPESSSFNSL HSSNYDPYSG NSCTPTDAQI GPVISVPESE KIINAYQFPS NDNEMIKKKR LTSGQLASLE RSFQEDIKLD
101: SDRKLKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYEVVSR EKQMLHEEVK KLRALLRDQG LIKKQISGGE DMTEIPSVVI AHPRAENLNN
201: NQINGENQIY GIDQYNNPML IASSCWPPFP
101: SDRKLKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYEVVSR EKQMLHEEVK KLRALLRDQG LIKKQISGGE DMTEIPSVVI AHPRAENLNN
201: NQINGENQIY GIDQYNNPML IASSCWPPFP
001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
Arabidopsis Description
ATHB-51Putative homeobox-leucine zipper protein ATHB-51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.