Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022687.1-P | Field mustard | nucleus | 96.15 | 96.15 |
| CDY69536 | Canola | nucleus | 92.95 | 92.95 |
| AT5G53980.1 | Thale cress | nucleus | 84.62 | 84.62 |
| VIT_10s0003g00380.t01 | Wine grape | nucleus | 45.51 | 41.52 |
| VIT_19s0014g02110.t01 | Wine grape | nucleus | 41.03 | 39.75 |
| PGSC0003DMT400081296 | Potato | nucleus | 42.95 | 37.43 |
| Solyc02g077590.1.1 | Tomato | nucleus | 41.67 | 36.31 |
| KRH26193 | Soybean | nucleus | 43.59 | 35.23 |
| KRH55168 | Soybean | nucleus | 44.23 | 34.5 |
| Solyc07g062790.1.1 | Tomato | nucleus | 37.82 | 33.91 |
| PGSC0003DMT400032390 | Potato | nucleus | 36.54 | 32.2 |
| PGSC0003DMT400054818 | Potato | nucleus | 43.59 | 32.08 |
| CDX67451 | Canola | nucleus | 33.33 | 29.21 |
| CDY11680 | Canola | nucleus | 33.33 | 29.21 |
| CDY48942 | Canola | nucleus | 27.56 | 26.54 |
| CDY11269 | Canola | nucleus | 28.85 | 20.64 |
| CDX80887 | Canola | nucleus | 28.21 | 20.18 |
| CDX70284 | Canola | nucleus | 29.49 | 20.0 |
| CDY10356 | Canola | nucleus | 29.49 | 20.0 |
| CDX99719 | Canola | nucleus | 25.0 | 20.0 |
| CDY04896 | Canola | nucleus | 28.85 | 19.82 |
| CDY71047 | Canola | nucleus | 28.85 | 19.57 |
| CDY49056 | Canola | nucleus | 32.69 | 19.39 |
| CDY37519 | Canola | nucleus | 32.05 | 19.23 |
| CDY25596 | Canola | nucleus | 32.69 | 19.17 |
| CDY28673 | Canola | nucleus | 33.33 | 19.12 |
| CDY33168 | Canola | nucleus | 23.08 | 19.05 |
| CDY46427 | Canola | nucleus | 30.77 | 18.9 |
| CDY52767 | Canola | nucleus | 30.77 | 18.9 |
| CDY69290 | Canola | nucleus | 30.13 | 18.8 |
| CDX75029 | Canola | nucleus | 22.44 | 18.72 |
| CDX90376 | Canola | nucleus | 33.97 | 18.6 |
| CDY39476 | Canola | nucleus | 33.33 | 18.44 |
| CDX76591 | Canola | nucleus | 26.92 | 18.34 |
| CDY57869 | Canola | nucleus | 26.92 | 18.26 |
| CDY71532 | Canola | nucleus | 26.28 | 17.98 |
| CDY69034 | Canola | nucleus | 30.77 | 17.91 |
| CDX89136 | Canola | nucleus | 26.28 | 17.9 |
| CDX70283 | Canola | nucleus | 25.0 | 17.81 |
| CDY42007 | Canola | nucleus | 25.0 | 17.81 |
| CDY28696 | Canola | nucleus | 30.13 | 17.8 |
| CDY13761 | Canola | nucleus | 35.26 | 17.68 |
| CDX89467 | Canola | nucleus | 33.97 | 17.67 |
| CDY48391 | Canola | nucleus | 28.21 | 17.46 |
| CDY25597 | Canola | nucleus | 33.33 | 17.39 |
| CDX69357 | Canola | nucleus | 32.69 | 17.29 |
| CDX75697 | Canola | nucleus | 32.69 | 17.29 |
| CDX76923 | Canola | nucleus | 33.97 | 17.1 |
| CDY38759 | Canola | nucleus | 30.13 | 16.55 |
| CDY44091 | Canola | nucleus | 28.21 | 16.54 |
| CDY69618 | Canola | nucleus | 32.05 | 16.39 |
| CDY11659 | Canola | nucleus | 30.13 | 16.32 |
| CDX78614 | Canola | nucleus | 31.41 | 16.28 |
| CDY70306 | Canola | nucleus | 30.13 | 16.1 |
| CDY23547 | Canola | nucleus | 28.85 | 16.07 |
| CDY67332 | Canola | nucleus | 31.41 | 16.07 |
| CDX85054 | Canola | nucleus | 31.41 | 15.96 |
| CDX69546 | Canola | nucleus | 31.41 | 15.86 |
| CDX70596 | Canola | nucleus | 30.77 | 15.79 |
| CDY27308 | Canola | nucleus | 23.08 | 15.72 |
| CDY33967 | Canola | nucleus | 30.77 | 15.48 |
| CDX80037 | Canola | nucleus | 25.0 | 15.35 |
| CDY41547 | Canola | nucleus | 25.0 | 15.35 |
| CDY37819 | Canola | nucleus | 30.13 | 15.16 |
| CDY70870 | Canola | nucleus | 28.85 | 14.95 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078GVX3 | UniProt:A0A078GVX3 | EnsemblPlants:CDY28803 | ProteinID:CDY28803 |
| ProteinID:CDY28803.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00041455001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF257 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EF1E0E |
Description
BnaA02g09950DBnaA02g09950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVX3]
Coordinates
chrLK032226:-:323640..324110
Molecular Weight (calculated)
18035.2 Da
IEP (calculated)
8.494
GRAVY (calculated)
-0.913
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPQGQSRN KKKRLTQDQV RQLEKCFTLN NKLEPDLKLQ LSNTLGLPQR QVAVWFQNKR ARSKTQSLEL QYRNLQSKLE AVLSDKAKLE HKVQFLQDEL
101: KRSRNQLALF THQDSPVDNS NLGSCEEGHD DQVVVFDELY DCFVTSGHGS SSNSWM
101: KRSRNQLALF THQDSPVDNS NLGSCEEGHD DQVVVFDELY DCFVTSGHGS SSNSWM
001: MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
101: KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
Arabidopsis Description
ATHB-52Homeobox-leucine zipper protein ATHB-52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.