Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028454.1-P | Field mustard | nucleus | 98.31 | 98.31 |
| CDY11680 | Canola | nucleus | 96.63 | 96.63 |
| CDY48942 | Canola | nucleus | 32.02 | 35.19 |
| CDY28803 | Canola | nucleus | 29.21 | 33.33 |
| CDY69536 | Canola | nucleus | 28.65 | 32.69 |
| CDY69290 | Canola | nucleus | 38.2 | 27.2 |
| CDX99719 | Canola | nucleus | 29.21 | 26.67 |
| CDY37519 | Canola | nucleus | 38.76 | 26.54 |
| CDY25596 | Canola | nucleus | 39.33 | 26.32 |
| CDY49056 | Canola | nucleus | 38.2 | 25.86 |
| CDY28673 | Canola | nucleus | 39.33 | 25.74 |
| CDY69034 | Canola | nucleus | 38.2 | 25.37 |
| CDX75029 | Canola | nucleus | 26.4 | 25.13 |
| CDY70306 | Canola | nucleus | 41.01 | 25.0 |
| CDY33168 | Canola | nucleus | 26.4 | 24.87 |
| CDX90376 | Canola | nucleus | 39.33 | 24.56 |
| CDY71532 | Canola | nucleus | 31.46 | 24.56 |
| CDY39476 | Canola | nucleus | 38.76 | 24.47 |
| CDX89136 | Canola | nucleus | 31.46 | 24.45 |
| CDX89467 | Canola | nucleus | 41.01 | 24.33 |
| CDX78614 | Canola | nucleus | 41.01 | 24.25 |
| CDY25597 | Canola | nucleus | 40.45 | 24.08 |
| CDY46427 | Canola | nucleus | 34.27 | 24.02 |
| CDX85054 | Canola | nucleus | 41.01 | 23.78 |
| CDX75697 | Canola | nucleus | 39.33 | 23.73 |
| CDX70596 | Canola | nucleus | 40.45 | 23.68 |
| CDX69546 | Canola | nucleus | 41.01 | 23.62 |
| CDY52767 | Canola | nucleus | 33.71 | 23.62 |
| CDX76923 | Canola | nucleus | 41.01 | 23.55 |
| CDY13761 | Canola | nucleus | 41.01 | 23.47 |
| CDY48391 | Canola | nucleus | 33.15 | 23.41 |
| CDY11269 | Canola | nucleus | 28.65 | 23.39 |
| CDX80887 | Canola | nucleus | 28.65 | 23.39 |
| CDX69357 | Canola | nucleus | 38.76 | 23.39 |
| CDY38759 | Canola | nucleus | 37.08 | 23.24 |
| CDX76591 | Canola | nucleus | 29.78 | 23.14 |
| CDY57869 | Canola | nucleus | 29.78 | 23.04 |
| CDX70284 | Canola | nucleus | 29.78 | 23.04 |
| CDY10356 | Canola | nucleus | 29.78 | 23.04 |
| CDY44091 | Canola | nucleus | 34.27 | 22.93 |
| CDY11659 | Canola | nucleus | 37.08 | 22.92 |
| CDY23547 | Canola | nucleus | 35.96 | 22.86 |
| CDX70283 | Canola | nucleus | 28.09 | 22.83 |
| CDY42007 | Canola | nucleus | 28.09 | 22.83 |
| CDY28696 | Canola | nucleus | 33.71 | 22.73 |
| CDY04896 | Canola | nucleus | 28.65 | 22.47 |
| CDX80037 | Canola | nucleus | 32.02 | 22.44 |
| CDY71047 | Canola | nucleus | 28.65 | 22.17 |
| CDY41547 | Canola | nucleus | 31.46 | 22.05 |
| CDY70870 | Canola | nucleus | 36.52 | 21.59 |
| CDY37819 | Canola | nucleus | 37.08 | 21.29 |
| CDY33967 | Canola | nucleus | 37.08 | 21.29 |
| CDY27308 | Canola | nucleus | 26.97 | 20.96 |
| CDY67332 | Canola | nucleus | 35.39 | 20.66 |
| CDY69618 | Canola | nucleus | 34.83 | 20.33 |
| Os03t0170600-01 | Rice | cytosol, nucleus | 5.06 | 12.86 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078BS32 | EnsemblPlants:CDX67451 | ProteinID:CDX67451 | ProteinID:CDX67451.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00098554001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF136 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EE5EB0 | : |
Description
BnaA07g14910D
Coordinates
chrLK031787:-:318668..319446
Molecular Weight (calculated)
20654.4 Da
IEP (calculated)
6.796
GRAVY (calculated)
-0.934
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNYDQESR SRSAPTGEID SQPAEKKRRL TIEQVNMLEK SFEEENKLEP ERKTELAKML GLPQRQVAVW FQNRKARCKN KKIERDYDVL KACYDSLLAK
101: HESVISENEK LKSKVFTLTE MLLPAAHQTQ RNHQGKLNSK GDDETMSSST ALVPLSNDQY FTNVDESFGW WVWPSNLM
101: HESVISENEK LKSKVFTLTE MLLPAAHQTQ RNHQGKLNSK GDDETMSSST ALVPLSNDQY FTNVDESFGW WVWPSNLM
001: MESNSFFFDP SASHGNSMFF LGNLNPVVQG GGARSMMNME ETSKRRPFFS SPEDLYDDDF YDDQLPEKKR RLTTEQVHLL EKSFETENKL EPERKTQLAK
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
101: KLGLQPRQVA VWFQNRRARW KTKQLERDYD LLKSTYDQLL SNYDSIVMDN DKLRSEVTSL TEKLQGKQET ANEPPGQVPE PNQLDPVYIN AAAIKTEDRL
201: SSGSVGSAVL DDDAPQLLDS CDSYFPSIVP IQDNSNASDH DNDRSCFADV FVPTTSPSHD HHGESLAFWG WP
Arabidopsis Description
HAT5HD-ZIP-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.