Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014417.1-P | Field mustard | nucleus | 97.37 | 97.37 |
| CDX89136 | Canola | nucleus | 97.37 | 96.94 |
| CDX76591 | Canola | nucleus | 85.96 | 85.59 |
| CDY57869 | Canola | nucleus | 85.53 | 84.78 |
| AT3G61890.1 | Thale cress | nucleus | 82.02 | 79.57 |
| CDY41547 | Canola | nucleus | 66.23 | 59.45 |
| CDX80037 | Canola | nucleus | 65.79 | 59.06 |
| CDY27308 | Canola | nucleus | 57.46 | 57.21 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 50.88 | 47.74 |
| KRH47840 | Soybean | nucleus | 48.68 | 46.64 |
| KRH06407 | Soybean | nucleus | 50.0 | 46.53 |
| PGSC0003DMT400000694 | Potato | nucleus | 50.88 | 46.03 |
| Solyc01g096320.2.1 | Tomato | nucleus | 47.37 | 45.19 |
| EER99231 | Sorghum | nucleus | 38.6 | 36.21 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 34.21 | 35.45 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 38.6 | 35.34 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 38.6 | 35.2 |
| Zm00001d021268_P001 | Maize | nucleus | 36.84 | 35.15 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 38.16 | 34.94 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 38.16 | 34.94 |
| Os09t0528200-01 | Rice | nucleus | 37.28 | 34.14 |
| Zm00001d006195_P001 | Maize | nucleus | 34.21 | 31.97 |
| CDY11680 | Canola | nucleus | 24.56 | 31.46 |
| CDX67451 | Canola | nucleus | 24.56 | 31.46 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 28.95 | 29.86 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 31.58 | 29.63 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 37.28 | 29.31 |
| Zm00001d002799_P001 | Maize | nucleus | 33.33 | 29.12 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 28.07 | 28.44 |
| CDY48942 | Canola | nucleus | 20.18 | 28.4 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 28.07 | 28.32 |
| Os04t0541700-02 | Rice | nucleus | 34.21 | 28.26 |
| Zm00001d017422_P001 | Maize | nucleus | 28.95 | 28.09 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 32.02 | 28.08 |
| EES11198 | Sorghum | nucleus | 32.89 | 27.78 |
| Zm00001d025964_P001 | Maize | nucleus | 32.46 | 27.61 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 32.02 | 27.44 |
| CDX75029 | Canola | nucleus | 22.37 | 27.27 |
| EES05814 | Sorghum | nucleus | 29.82 | 27.2 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 31.58 | 27.17 |
| CDY33168 | Canola | nucleus | 22.37 | 26.98 |
| CDY28803 | Canola | nucleus | 17.98 | 26.28 |
| CDY69536 | Canola | nucleus | 17.98 | 26.28 |
| CDX99719 | Canola | nucleus | 22.37 | 26.15 |
| Os02t0649300-01 | Rice | nucleus | 28.51 | 24.9 |
| CDX80887 | Canola | nucleus | 22.81 | 23.85 |
| CDY11269 | Canola | nucleus | 22.81 | 23.85 |
| CDX70284 | Canola | nucleus | 23.68 | 23.48 |
| CDY10356 | Canola | nucleus | 23.68 | 23.48 |
| CDY37519 | Canola | nucleus | 26.75 | 23.46 |
| CDY71047 | Canola | nucleus | 23.25 | 23.04 |
| CDY04896 | Canola | nucleus | 22.81 | 22.91 |
| CDY49056 | Canola | nucleus | 26.32 | 22.81 |
| CDY48391 | Canola | nucleus | 25.0 | 22.62 |
| CDY28673 | Canola | nucleus | 26.75 | 22.43 |
| CDY38759 | Canola | nucleus | 27.63 | 22.18 |
| CDY69290 | Canola | nucleus | 24.12 | 22.0 |
| CDY11659 | Canola | nucleus | 27.63 | 21.88 |
| CDY25596 | Canola | nucleus | 25.44 | 21.8 |
| CDY23547 | Canola | nucleus | 26.75 | 21.79 |
| CDY44091 | Canola | nucleus | 25.0 | 21.43 |
| CDX70283 | Canola | nucleus | 20.18 | 21.0 |
| CDY42007 | Canola | nucleus | 20.18 | 21.0 |
| CDY69034 | Canola | nucleus | 24.12 | 20.52 |
| CDY46427 | Canola | nucleus | 22.81 | 20.47 |
| CDY52767 | Canola | nucleus | 22.81 | 20.47 |
| CDX69357 | Canola | nucleus | 26.32 | 20.34 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 28.07 | 20.13 |
| CDY28696 | Canola | nucleus | 23.25 | 20.08 |
| CDX75697 | Canola | nucleus | 25.88 | 20.0 |
| CDX76923 | Canola | nucleus | 27.19 | 20.0 |
| CDX78614 | Canola | nucleus | 26.32 | 19.93 |
| CDY70306 | Canola | nucleus | 25.44 | 19.86 |
| CDY25597 | Canola | nucleus | 25.88 | 19.73 |
| CDY69618 | Canola | nucleus | 26.32 | 19.67 |
| CDX89467 | Canola | nucleus | 25.88 | 19.67 |
| CDX90376 | Canola | nucleus | 24.56 | 19.65 |
| CDY13761 | Canola | nucleus | 26.75 | 19.61 |
| CDY70870 | Canola | nucleus | 25.88 | 19.6 |
| CDX85054 | Canola | nucleus | 26.32 | 19.54 |
| CDY39476 | Canola | nucleus | 24.12 | 19.5 |
| CDX69546 | Canola | nucleus | 26.32 | 19.42 |
| CDX70596 | Canola | nucleus | 25.88 | 19.41 |
| CDY67332 | Canola | nucleus | 25.88 | 19.34 |
| CDY37819 | Canola | nucleus | 25.88 | 19.03 |
| CDY33967 | Canola | nucleus | 25.88 | 19.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078K0U7 | UniProt:A0A078K0U7 | EnsemblPlants:CDY71532 | ProteinID:CDY71532 |
| ProteinID:CDY71532.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00016893001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEDCC9 | : |
Description
BnaCnng73330DBnaCnng73330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0U7]
Coordinates
chrLK046253:+:899..2262
Molecular Weight (calculated)
26987.4 Da
IEP (calculated)
4.820
GRAVY (calculated)
-1.017
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGDFFSCF SEINSGMTMN KKKMRKGTNH KRFNEEQIKS LEVIFESETR LEPRKKMQLA RELGLQPRQV AIWFQNKRAR WKSKQLEKEY DILRANYNNL
101: ASQFEIIKKE KQALVSELQR LNEEMRKTKE ERNDECCGEQ RVALSSSTWS DNGKYEPEVR LNQGIVLCND DIKTEYFGFE EESNHELINI VEQADDSGLT
201: SSDNWGNFNS ESFLDQSSSN YPWWDFWS
101: ASQFEIIKKE KQALVSELQR LNEEMRKTKE ERNDECCGEQ RVALSSSTWS DNGKYEPEVR LNQGIVLCND DIKTEYFGFE EESNHELINI VEQADDSGLT
201: SSDNWGNFNS ESFLDQSSSN YPWWDFWS
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Arabidopsis Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.