Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76591 | Canola | nucleus | 82.13 | 84.28 |
| CDY57869 | Canola | nucleus | 82.13 | 83.91 |
| Bra007637.1-P | Field mustard | nucleus | 82.13 | 83.91 |
| Bra014417.1-P | Field mustard | nucleus | 80.85 | 83.33 |
| CDX89136 | Canola | nucleus | 80.85 | 82.97 |
| CDY71532 | Canola | nucleus | 79.57 | 82.02 |
| AT2G46680.1 | Thale cress | nucleus | 65.96 | 60.08 |
| KRH47840 | Soybean | nucleus | 48.94 | 48.32 |
| PGSC0003DMT400000694 | Potato | nucleus | 51.49 | 48.02 |
| KRH06407 | Soybean | nucleus | 49.36 | 47.35 |
| Solyc01g096320.2.1 | Tomato | nucleus | 48.09 | 47.28 |
| VIT_15s0048g02870.t01 | Wine grape | nucleus | 48.51 | 46.91 |
| EER99231 | Sorghum | nucleus | 36.6 | 35.39 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 32.77 | 35.0 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 37.02 | 34.94 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 37.02 | 34.8 |
| Zm00001d021268_P001 | Maize | nucleus | 35.32 | 34.73 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 36.6 | 34.54 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 36.6 | 34.54 |
| Os09t0528200-01 | Rice | nucleus | 35.74 | 33.73 |
| Zm00001d006195_P001 | Maize | nucleus | 32.34 | 31.15 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 27.66 | 29.41 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 36.17 | 29.31 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 29.79 | 28.81 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 27.23 | 28.44 |
| Zm00001d017422_P001 | Maize | nucleus | 27.66 | 27.66 |
| EES05814 | Sorghum | nucleus | 29.36 | 27.6 |
| Zm00001d002799_P001 | Maize | nucleus | 30.64 | 27.59 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 26.38 | 27.43 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 30.21 | 27.31 |
| Os04t0541700-02 | Rice | nucleus | 31.91 | 27.17 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 30.64 | 27.07 |
| EES11198 | Sorghum | nucleus | 30.64 | 26.67 |
| Zm00001d025964_P001 | Maize | nucleus | 30.21 | 26.49 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 29.79 | 26.42 |
| AT5G53980.1 | Thale cress | nucleus | 17.45 | 26.28 |
| Os02t0649300-01 | Rice | nucleus | 27.66 | 24.9 |
| AT2G36610.1 | Thale cress | nucleus | 19.15 | 24.32 |
| AT3G01470.1 | Thale cress | nucleus | 27.23 | 23.53 |
| AT5G03790.1 | Thale cress | nucleus | 22.55 | 22.55 |
| AT1G26960.1 | Thale cress | nucleus | 22.55 | 20.78 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 28.09 | 20.75 |
| AT1G69780.1 | Thale cress | nucleus | 25.53 | 20.41 |
| AT4G40060.1 | Thale cress | nucleus | 24.68 | 19.73 |
| AT2G22430.1 | Thale cress | nucleus | 25.96 | 19.61 |
| AT5G65310.1 | Thale cress | nucleus | 25.53 | 19.23 |
| AT3G01220.1 | Thale cress | nucleus | 22.98 | 18.88 |
| AT5G15150.1 | Thale cress | nucleus | 23.4 | 17.52 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:825362 | UniProt:A0A178VND2 | ProteinID:AEE80275.1 | EMBL:AF001949 |
| ArrayExpress:AT3G61890 | EnsemblPlantsGene:AT3G61890 | RefSeq:AT3G61890 | TAIR:AT3G61890 | RefSeq:AT3G61890-TAIR-G | EnsemblPlants:AT3G61890.1 |
| TAIR:AT3G61890.1 | Symbol:ATHB-12 | EMBL:AY059828 | EMBL:AY087187 | Unigene:At.25517 | EMBL:BT002206 |
| ProteinID:CAB71896.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009615 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0045893 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | RefSeq:NP_191748.1 | ProteinID:OAP06981.1 | PFAM:PF00046 | PFAM:PF02183 | PO:PO:0000013 |
| PO:PO:0000016 | PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006343 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009053 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF346 | UniProt:Q9M276 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI00000AC254 | SEG:seg | : | : | : | : |
Description
ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
Coordinates
chr3:-:22914154..22915393
Molecular Weight (calculated)
27486.8 Da
IEP (calculated)
4.909
GRAVY (calculated)
-1.091
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.