Factsheet for Bra007637.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57869	Canola	nucleus	100.0	100.0
Bra014417.1-P	Field mustard	nucleus	85.65	86.4
AT3G61890.1	Thale cress	nucleus	83.91	82.13
Bra004516.1-P	Field mustard	nucleus	66.52	60.24
Bra039265.1-P	Field mustard	nucleus	56.52	56.77
VIT_15s0048g02870.t01	Wine grape	nucleus	49.57	46.91
PGSC0003DMT400000694	Potato	nucleus	50.0	45.63
KRH47840	Soybean	nucleus	46.96	45.38
KRH06407	Soybean	nucleus	47.83	44.9
Solyc01g096320.2.1	Tomato	nucleus	46.52	44.77
EER99231	Sorghum	nucleus	36.52	34.57
GSMUA_Achr1P16280_001	Banana	nucleus	33.04	34.55
Zm00001d021268_P001	Maize	nucleus	35.22	33.89
TraesCS5B01G317400.1	Wheat	nucleus	36.52	33.73
HORVU5Hr1G081090.1	Barley	nucleus	36.52	33.6
TraesCS5D01G323100.2	Wheat	nucleus	36.09	33.33
TraesCS5A01G316800.1	Wheat	nucleus	36.09	33.33
Os09t0528200-01	Rice	nucleus	34.35	31.73
Zm00001d006195_P001	Maize	nucleus	32.17	30.33
Bra028454.1-P	Field mustard	nucleus	23.04	29.78
GSMUA_Achr1P18670_001	Banana	nucleus	36.52	28.97
TraesCS6A01G240400.1	Wheat	nucleus	26.52	27.6
TraesCS2D01G387300.1	Wheat	nucleus	28.7	27.16
TraesCS6D01G222600.1	Wheat	nucleus	26.09	26.67
TraesCS6B01G284300.1	Wheat	nucleus	26.09	26.55
EES05814	Sorghum	nucleus	28.7	26.4
Zm00001d017422_P001	Maize	nucleus	26.96	26.38
Bra022687.1-P	Field mustard	nucleus	17.83	26.28
Os04t0541700-02	Rice	nucleus	31.3	26.09
Zm00001d002799_P001	Maize	nucleus	29.57	26.05
TraesCS2B01G407600.1	Wheat	nucleus	29.13	25.77
EES11198	Sorghum	nucleus	30.0	25.56
HORVU2Hr1G092710.2	Barley	nucleus	29.13	25.19
Bra005259.1-P	Field mustard	nucleus	20.43	25.13
Zm00001d025964_P001	Maize	nucleus	29.13	25.0
TraesCS2A01G389400.1	Wheat	nucleus	28.7	24.91
Bra039116.1-P	Field mustard	nucleus	26.96	23.85
Os02t0649300-01	Rice	nucleus	26.52	23.37
Bra040519.1-P	Field mustard	nucleus	26.96	22.63
Bra009510.1-P	Field mustard	nucleus	22.61	22.61
Bra028820.1-P	Field mustard	nucleus	21.74	22.03
Bra030238.1-P	Field mustard	nucleus	27.39	21.21
Bra003980.1-P	Field mustard	nucleus	23.04	21.03
Bra038523.1-P	Field mustard	nucleus	28.26	20.9
Bra011808.1-P	Field mustard	nucleus	26.52	20.68
Bra024377.1-P	Field mustard	nucleus	27.39	20.66
Bra008717.1-P	Field mustard	nucleus	25.65	20.49
Bra031866.1-P	Field mustard	nucleus	27.39	20.32
Bra039135.1-P	Field mustard	nucleus	23.91	20.22
HORVU6Hr1G061390.1	Barley	nucleus	27.83	20.13
Bra016266.1-P	Field mustard	nucleus	24.78	19.79
Bra006285.1-P	Field mustard	nucleus	24.35	19.79
Bra023506.1-P	Field mustard	nucleus	24.78	19.72
Bra007881.1-P	Field mustard	nucleus	24.35	19.65
Bra010642.1-P	Field mustard	nucleus	24.35	19.58
Bra016300.1-P	Field mustard	nucleus	21.3	19.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra007637	EnsemblPlants:Bra007637.1	EnsemblPlants:Bra007637.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4CTU3	PFAM:PF00046
PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF346
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002542A43	SEG:seg	:	:

Description

AT3G61890 (E=1e-090) ATHB-12, ATHB12 | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12); transcription activator/ transcription factor

Coordinates

chrA09:-:30200731..30201824

Molecular Weight (calculated)

26947.5 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.984

Length

230 amino acids

Sequence
(BLAST)

001: MEEGDVFNCC FSEINSGMSM NKNKKKMKKS NNQKRFSEEQ IKSLEVIFES ETRLEPRKKV QVAQELGLQP RQVAIWFQNK RARWKTKQLE KEYNILRANY
101: NHLASQFDIM KKEKQALVSE LQRLNEEMHK SKEERREECC GEQRVALSST TRSENGKCEP EVRINQGIAL CNDDIKTEYF GFEESNHELM NIVEQAGDSC
201: LTSSDNWGGF NSDSILDQSS SNYPWWDFWS

Best Arabidopsis Sequence Match ( AT3G61890.1 )
(BLAST)

001: MEEGDFFNCC FSEISSGMTM NKKKMKKSNN QKRFSEEQIK SLELIFESET RLEPRKKVQV ARELGLQPRQ VAIWFQNKRA RWKTKQLEKE YNTLRANYNN
101: LASQFEIMKK EKQSLVSELQ RLNEEMQRPK EEKHHECCGD QGLALSSSTE SHNGKSEPEG RLDQGSVLCN DGDYNNNIKT EYFGFEEETD HELMNIVEKA
201: DDSCLTSSEN WGGFNSDSLL DQSSSNYPNW WEFWS

Arabidopsis Description

ATHB-12HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.