Factsheet for Bra028820.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04896	Canola	nucleus	97.8	97.8
Bra009510.1-P	Field mustard	nucleus	81.94	80.87
AT5G03790.1	Thale cress	nucleus	82.82	80.0
VIT_08s0007g04200.t01	Wine grape	nucleus	45.81	47.27
PGSC0003DMT400006949	Potato	nucleus	45.37	42.39
Solyc09g008810.2.1	Tomato	nucleus	44.93	42.32
Bra005259.1-P	Field mustard	nucleus	33.48	40.64
Bra022687.1-P	Field mustard	nucleus	20.26	29.49
Bra028454.1-P	Field mustard	nucleus	22.47	28.65
Bra014417.1-P	Field mustard	nucleus	22.47	22.37
Bra016300.1-P	Field mustard	nucleus	24.67	22.05
Bra040519.1-P	Field mustard	nucleus	26.43	21.9
Bra007637.1-P	Field mustard	nucleus	22.03	21.74
Bra039116.1-P	Field mustard	nucleus	24.23	21.15
Bra039135.1-P	Field mustard	nucleus	25.11	20.96
Bra006285.1-P	Field mustard	nucleus	25.99	20.85
Bra007881.1-P	Field mustard	nucleus	25.99	20.7
Bra003980.1-P	Field mustard	nucleus	22.91	20.63
Bra004516.1-P	Field mustard	nucleus	22.91	20.47
Bra024377.1-P	Field mustard	nucleus	27.31	20.33
Bra008717.1-P	Field mustard	nucleus	25.55	20.14
Bra016266.1-P	Field mustard	nucleus	25.55	20.14
Bra031866.1-P	Field mustard	nucleus	27.31	20.0
Bra023506.1-P	Field mustard	nucleus	25.11	19.72
Bra030238.1-P	Field mustard	nucleus	25.55	19.53
Bra011808.1-P	Field mustard	nucleus	24.67	18.98
Bra039265.1-P	Field mustard	nucleus	18.94	18.78
Bra038523.1-P	Field mustard	nucleus	25.55	18.65
Bra010642.1-P	Field mustard	nucleus	22.03	17.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra028820	EnsemblPlants:Bra028820.1	EnsemblPlants:Bra028820.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:M4EJ54	PFAM:PF00046	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF287	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002543031	:	:

Description

AT5G03790 (E=3e-102) ATHB51, LMI1, HB51 | HB51; DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA02:+:1919106..1920572

Molecular Weight (calculated)

26031.9 Da

IEP (calculated)

9.271

GRAVY (calculated)

-0.717

Length

227 amino acids

Sequence
(BLAST)

001: MEWSMTSNVE NVRVAFLPQP WPESSSFNSL HSFNYDPYAA GNSYTQTGPV ISVPESEKII NAYRYPSNKN EMTKKKRLTS GQLASLEQSF QGEIKLDSDR
101: KLKLSRDLGL QPRQIAVWFQ NRRARWKAKQ LEQLYDSLRQ EYDLVSREKQ MLHEEVKKLR AVLRDQGLIK KQISGGEDTT ELPSVVIAQP RMENLHTNPL
201: TGVNQIYGID QCNNPMVVAS SSWPPCQ

Best Arabidopsis Sequence Match ( AT5G03790.1 )
(BLAST)

001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP

Arabidopsis Description

ATHB-51Putative homeobox-leucine zipper protein ATHB-51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.