Factsheet for Bra038523.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13761	Canola	nucleus	100.0	100.0
CDX76923	Canola	nucleus	93.25	93.55
Bra030238.1-P	Field mustard	nucleus	84.89	88.89
AT2G22430.1	Thale cress	nucleus	88.1	88.1
Bra011808.1-P	Field mustard	nucleus	68.81	72.54
Bra010642.1-P	Field mustard	nucleus	64.31	69.93
KRH31331	Soybean	nucleus	50.8	50.32
KRH59287	Soybean	nucleus	49.52	50.16
KRG97544	Soybean	nucleus	51.77	50.0
KRH43132	Soybean	nucleus	49.84	49.68
VIT_07s0191g00180.t01	Wine grape	nucleus	49.2	45.67
PGSC0003DMT400041655	Potato	nucleus	50.8	45.4
Solyc05g051460.2.1	Tomato	nucleus	45.66	45.37
Bra024377.1-P	Field mustard	nucleus	44.37	45.25
Bra031866.1-P	Field mustard	nucleus	45.02	45.16
Solyc11g010270.1.1	Tomato	nucleus	50.48	44.86
PGSC0003DMT400043251	Potato	nucleus	45.34	43.38
Bra028454.1-P	Field mustard	nucleus	23.79	41.57
Bra022687.1-P	Field mustard	nucleus	17.36	34.62
Bra039116.1-P	Field mustard	nucleus	26.69	31.92
Bra040519.1-P	Field mustard	nucleus	27.65	31.39
Bra003980.1-P	Field mustard	nucleus	25.08	30.95
Bra005259.1-P	Field mustard	nucleus	18.33	30.48
Bra016300.1-P	Field mustard	nucleus	24.12	29.53
Bra007881.1-P	Field mustard	nucleus	27.01	29.47
Bra039135.1-P	Field mustard	nucleus	25.4	29.04
Bra039265.1-P	Field mustard	nucleus	21.22	28.82
Bra016266.1-P	Field mustard	nucleus	26.69	28.82
Bra008717.1-P	Field mustard	nucleus	26.69	28.82
Bra006285.1-P	Field mustard	nucleus	26.05	28.62
Bra007637.1-P	Field mustard	nucleus	20.9	28.26
Bra023506.1-P	Field mustard	nucleus	26.05	28.03
Bra004516.1-P	Field mustard	nucleus	22.51	27.56
Bra014417.1-P	Field mustard	nucleus	19.61	26.75
Bra028820.1-P	Field mustard	nucleus	18.65	25.55
Bra009510.1-P	Field mustard	nucleus	18.65	25.22

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ProteinID:AAF73482	ProteinID:AAF73482.1	EMBL:AF268422	EnsemblPlantsGene:Bra038523
EnsemblPlants:Bra038523.1	EnsemblPlants:Bra038523.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	UniProt:M4FBQ7	PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF196	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0002541F4F
SEG:seg	:	:	:	:	:

Description

AT2G22430 (E=1e-116) ATHB6 | ATHB6; DNA binding / protein binding / sequence-specific DNA binding / transcription activator/ transcription factor

Coordinates

chrA09:+:5069278..5070381

Molecular Weight (calculated)

35097.3 Da

IEP (calculated)

4.252

GRAVY (calculated)

-0.861

Length

311 amino acids

Sequence
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDQPSPRR YGREFQSMLE GYEEEEEEAV TEERGQTGLA EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE IGKLKAKLNG EEEVEEDDED EENNAVTMEC DVSVKEEEVS LPEELTDPPS
201: SPPQLLEHSD SFNYRSFTDL RDLLPLKAAA SSVAAAGSSD SSDSSAVLNE ESSSNVTAGP VTVPSGGFLQ FVKMEQTEDH DDFLSGEEAC GFFSDEQPPS
301: LHWYSTVDQW N

Best Arabidopsis Sequence Match ( AT2G22430.1 )
(BLAST)

001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N

Arabidopsis Description

ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.