Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041655 | Potato | nucleus | 94.86 | 95.4 |
| Solyc05g051460.2.1 | Tomato | nucleus | 61.14 | 68.37 |
| KRH43132 | Soybean | nucleus | 54.86 | 61.54 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 57.14 | 59.7 |
| KRH59287 | Soybean | nucleus | 52.29 | 59.61 |
| CDY48942 | Canola | nucleus | 27.14 | 58.64 |
| KRH31331 | Soybean | nucleus | 50.86 | 56.69 |
| KRG97544 | Soybean | nucleus | 51.43 | 55.9 |
| Bra030238.1-P | Field mustard | nucleus | 44.0 | 51.85 |
| CDY25597 | Canola | nucleus | 44.29 | 51.84 |
| CDY25596 | Canola | nucleus | 39.14 | 51.5 |
| CDX89467 | Canola | nucleus | 44.0 | 51.33 |
| AT2G22430.1 | Thale cress | nucleus | 45.43 | 51.13 |
| Bra038523.1-P | Field mustard | nucleus | 44.86 | 50.48 |
| CDY13761 | Canola | nucleus | 44.86 | 50.48 |
| CDX76923 | Canola | nucleus | 44.0 | 49.68 |
| CDX99719 | Canola | nucleus | 27.43 | 49.23 |
| CDX75697 | Canola | nucleus | 40.86 | 48.47 |
| Bra011808.1-P | Field mustard | nucleus | 40.86 | 48.47 |
| CDY39476 | Canola | nucleus | 38.86 | 48.23 |
| CDX69357 | Canola | nucleus | 40.57 | 48.14 |
| CDY67332 | Canola | nucleus | 41.71 | 47.87 |
| AT4G40060.1 | Thale cress | nucleus | 40.0 | 47.62 |
| Bra024377.1-P | Field mustard | nucleus | 41.43 | 47.54 |
| CDX90376 | Canola | nucleus | 38.57 | 47.37 |
| CDY69618 | Canola | nucleus | 41.14 | 47.21 |
| Bra010642.1-P | Field mustard | nucleus | 38.29 | 46.85 |
| CDY33967 | Canola | nucleus | 41.43 | 46.77 |
| Bra031866.1-P | Field mustard | nucleus | 40.86 | 46.13 |
| AT5G65310.1 | Thale cress | nucleus | 40.86 | 45.83 |
| CDY37819 | Canola | nucleus | 40.57 | 45.81 |
| Solyc08g083130.2.1 | Tomato | extracellular, nucleus | 21.43 | 38.27 |
| Solyc02g086930.2.1 | Tomato | nucleus | 27.43 | 33.68 |
| Solyc04g074700.2.1 | Tomato | nucleus | 28.29 | 31.94 |
| Solyc05g006980.2.1 | Tomato | nucleus | 26.0 | 31.6 |
| Solyc04g005800.2.1 | Tomato | nucleus | 26.57 | 31.31 |
| Solyc01g010600.2.1 | Tomato | nucleus | 21.43 | 30.86 |
| Solyc05g007180.2.1 | Tomato | nucleus | 26.29 | 30.16 |
| Solyc01g096320.2.1 | Tomato | nucleus | 20.57 | 30.13 |
| Solyc06g053220.2.1 | Tomato | nucleus | 18.86 | 29.33 |
| Solyc07g062790.1.1 | Tomato | nucleus | 14.57 | 29.31 |
| Solyc09g008810.2.1 | Tomato | nucleus | 20.0 | 29.05 |
| Solyc03g113270.2.1 | Tomato | nucleus, plastid | 26.57 | 28.79 |
| Solyc02g077590.1.1 | Tomato | nucleus | 14.29 | 27.93 |
| Solyc02g067410.1.1 | Tomato | nucleus | 20.86 | 27.76 |
| Solyc03g082550.2.1 | Tomato | nucleus | 16.57 | 27.75 |
| Solyc02g087840.2.1 | Tomato | nucleus | 23.43 | 26.54 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| UniProt:K4D5I8 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF524 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc11g010270.1 |
| EnsemblPlants:Solyc11g010270.1.1 | UniParc:UPI00027694E9 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr11:-:3354569..3357081
Molecular Weight (calculated)
39364.9 Da
IEP (calculated)
4.309
GRAVY (calculated)
-0.866
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRLGSSDSL GALMSMCPST TDDQNHGNSH VYSTRDFQSM LELGLDEEGC VEESGQKKRR LSVEQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV
101: WFQNRRARWK TKQLERDYNV LKANFDSLKH NYESLKHDNE ALAKEIRELK FKVYGGENGE SRGAVVVSVK EEAMESDNDD KMIEQNNPND LLEEDDEDQD
201: DDVEINATIA STIFADFNKD GSSDSDNSSA ILNEDNSPNA AAISSSGAFL ISNDGGVGCS SPNSLNFTFK FTESSPKSIL GDSQKANCFT YQPPSTTTTT
301: QYVKMEEHNF FNGEESCSTL FSDEQAPTLQ WYCSEDWNFK DSKSSFFDHE
101: WFQNRRARWK TKQLERDYNV LKANFDSLKH NYESLKHDNE ALAKEIRELK FKVYGGENGE SRGAVVVSVK EEAMESDNDD KMIEQNNPND LLEEDDEDQD
201: DDVEINATIA STIFADFNKD GSSDSDNSSA ILNEDNSPNA AAISSSGAFL ISNDGGVGCS SPNSLNFTFK FTESSPKSIL GDSQKANCFT YQPPSTTTTT
301: QYVKMEEHNF FNGEESCSTL FSDEQAPTLQ WYCSEDWNFK DSKSSFFDHE
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
Arabidopsis Description
ATHB-6Homeobox-leucine zipper protein ATHB-6 [Source:UniProtKB/Swiss-Prot;Acc:P46668]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.