Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75697 | Canola | nucleus | 86.05 | 85.76 |
| Bra011808.1-P | Field mustard | nucleus | 86.05 | 85.76 |
| CDX69357 | Canola | nucleus | 85.71 | 85.42 |
| Bra010642.1-P | Field mustard | nucleus | 79.59 | 81.82 |
| CDY39476 | Canola | nucleus | 78.23 | 81.56 |
| CDX90376 | Canola | nucleus | 78.91 | 81.4 |
| AT2G22430.1 | Thale cress | nucleus | 76.87 | 72.67 |
| KRH59287 | Soybean | nucleus | 48.98 | 46.91 |
| KRH43132 | Soybean | nucleus | 48.98 | 46.15 |
| KRH31331 | Soybean | nucleus | 48.98 | 45.86 |
| KRG97544 | Soybean | nucleus | 49.66 | 45.34 |
| Solyc05g051460.2.1 | Tomato | nucleus | 46.6 | 43.77 |
| AT5G65310.1 | Thale cress | nucleus | 45.92 | 43.27 |
| PGSC0003DMT400043251 | Potato | nucleus | 46.6 | 42.15 |
| VIT_07s0191g00180.t01 | Wine grape | nucleus | 47.28 | 41.49 |
| PGSC0003DMT400041655 | Potato | nucleus | 47.96 | 40.52 |
| Solyc11g010270.1.1 | Tomato | nucleus | 47.62 | 40.0 |
| AT3G01470.1 | Thale cress | nucleus | 29.93 | 32.35 |
| AT5G53980.1 | Thale cress | nucleus | 15.99 | 30.13 |
| AT2G36610.1 | Thale cress | nucleus | 18.71 | 29.73 |
| AT3G01220.1 | Thale cress | nucleus | 27.89 | 28.67 |
| AT1G26960.1 | Thale cress | nucleus | 24.83 | 28.63 |
| AT1G69780.1 | Thale cress | nucleus | 27.89 | 27.89 |
| AT5G15150.1 | Thale cress | nucleus | 26.87 | 25.16 |
| AT2G46680.1 | Thale cress | nucleus | 21.77 | 24.81 |
| AT5G03790.1 | Thale cress | nucleus | 19.73 | 24.68 |
| AT3G61890.1 | Thale cress | nucleus | 19.73 | 24.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | EntrezGene:830169 | UniProt:A0A178V0P3 | ProteinID:AAD46064.1 | ProteinID:AEE87163.1 |
| EMBL:AF370620 | ArrayExpress:AT4G40060 | EnsemblPlantsGene:AT4G40060 | RefSeq:AT4G40060 | TAIR:AT4G40060 | RefSeq:AT4G40060-TAIR-G |
| EnsemblPlants:AT4G40060.1 | TAIR:AT4G40060.1 | Symbol:ATHB16 | EMBL:AY054571 | EMBL:AY128917 | Unigene:At.20863 |
| ProteinID:CAB38919.1 | ProteinID:CAB80669.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030308 | GO:GO:0040007 | GO:GO:0043565 | GO:GO:0045893 |
| GO:GO:0048510 | GO:GO:0048573 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | RefSeq:NP_195716.1 | ProteinID:OAO99455.1 | PFAM:PF00046 | PFAM:PF02183 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF196 |
| UniProt:Q940J1 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000009D092 | SEG:seg | : |
Description
ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
Coordinates
chr4:-:18571239..18573084
Molecular Weight (calculated)
33396.3 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.955
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.