Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70283 | Canola | nucleus | 98.17 | 98.17 |
| CDY71047 | Canola | nucleus | 66.21 | 63.04 |
| CDY11269 | Canola | nucleus | 61.64 | 61.93 |
| CDX80887 | Canola | nucleus | 61.64 | 61.93 |
| CDX70284 | Canola | nucleus | 64.38 | 61.3 |
| CDY10356 | Canola | nucleus | 64.38 | 61.3 |
| CDY04896 | Canola | nucleus | 63.47 | 61.23 |
| Solyc09g008810.2.1 | Tomato | nucleus | 44.29 | 40.25 |
| VIT_08s0007g04200.t01 | Wine grape | nucleus | 39.73 | 39.55 |
| PGSC0003DMT400006949 | Potato | nucleus | 43.84 | 39.51 |
| CDX75029 | Canola | nucleus | 32.42 | 37.97 |
| CDY33168 | Canola | nucleus | 31.51 | 36.51 |
| CDY48942 | Canola | nucleus | 23.74 | 32.1 |
| CDY11680 | Canola | nucleus | 22.83 | 28.09 |
| CDX67451 | Canola | nucleus | 22.83 | 28.09 |
| CDY69536 | Canola | nucleus | 19.18 | 26.92 |
| CDY28803 | Canola | nucleus | 17.81 | 25.0 |
| CDX99719 | Canola | nucleus | 20.09 | 22.56 |
| CDY37519 | Canola | nucleus | 24.66 | 20.77 |
| CDY49056 | Canola | nucleus | 24.66 | 20.53 |
| CDX89136 | Canola | nucleus | 21.46 | 20.52 |
| CDY52767 | Canola | nucleus | 23.74 | 20.47 |
| CDY46427 | Canola | nucleus | 23.74 | 20.47 |
| CDY57869 | Canola | nucleus | 21.46 | 20.43 |
| CDY28673 | Canola | nucleus | 25.11 | 20.22 |
| CDY71532 | Canola | nucleus | 21.0 | 20.18 |
| CDX76591 | Canola | nucleus | 21.0 | 20.09 |
| CDY69290 | Canola | nucleus | 22.37 | 19.6 |
| CDY25596 | Canola | nucleus | 23.29 | 19.17 |
| CDY48391 | Canola | nucleus | 21.92 | 19.05 |
| CDY70306 | Canola | nucleus | 25.11 | 18.84 |
| CDY44091 | Canola | nucleus | 22.83 | 18.8 |
| CDY27308 | Canola | nucleus | 19.63 | 18.78 |
| CDY69618 | Canola | nucleus | 26.03 | 18.69 |
| CDY67332 | Canola | nucleus | 26.03 | 18.69 |
| CDY23547 | Canola | nucleus | 23.74 | 18.57 |
| CDY41547 | Canola | nucleus | 21.46 | 18.5 |
| CDY38759 | Canola | nucleus | 23.74 | 18.31 |
| CDX75697 | Canola | nucleus | 24.66 | 18.31 |
| CDX85054 | Canola | nucleus | 25.57 | 18.24 |
| CDX69546 | Canola | nucleus | 25.57 | 18.12 |
| CDX80037 | Canola | nucleus | 21.0 | 18.11 |
| CDY39476 | Canola | nucleus | 23.29 | 18.09 |
| CDY25597 | Canola | nucleus | 24.66 | 18.06 |
| CDY11659 | Canola | nucleus | 23.74 | 18.06 |
| CDX69357 | Canola | nucleus | 24.2 | 17.97 |
| CDX78614 | Canola | nucleus | 24.66 | 17.94 |
| CDY70870 | Canola | nucleus | 24.66 | 17.94 |
| CDY69034 | Canola | nucleus | 21.92 | 17.91 |
| CDX76923 | Canola | nucleus | 25.11 | 17.74 |
| CDY37819 | Canola | nucleus | 25.11 | 17.74 |
| CDY33967 | Canola | nucleus | 25.11 | 17.74 |
| CDX70596 | Canola | nucleus | 24.2 | 17.43 |
| CDY13761 | Canola | nucleus | 24.66 | 17.36 |
| CDX89467 | Canola | nucleus | 23.74 | 17.33 |
| CDX90376 | Canola | nucleus | 22.37 | 17.19 |
| CDY28696 | Canola | nucleus | 19.63 | 16.29 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078HW14 | UniProt:A0A078HW14 | EnsemblPlants:CDY42007 | ProteinID:CDY42007 |
| ProteinID:CDY42007.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00074017001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF287 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EF25A5 |
Description
BnaC04g00850DBnaC04g00850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW14]
Coordinates
chrLK032512:-:14758..16489
Molecular Weight (calculated)
25362.9 Da
IEP (calculated)
8.047
GRAVY (calculated)
-0.797
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWSTTSNVE NMRVAFTPLQ WLESNSSNSL QNFSYDPSAG NSFTPVLTQT GPVISVPESS EKITNACQYP SNDDEMIKKK QKLTTEQLAS LEQSFQEDIK
101: LDSDRKVKLS KELRLQPRQV AVWFQNRRAR WRVKHLEESY NSLRKEYDVV SRQNQILHDE VMNLRGVILK DHLMKRQMNL NNNQIAGGSQ IYGTDQYNNP
201: MCVASTCWPP LSSQQPYPW
101: LDSDRKVKLS KELRLQPRQV AVWFQNRRAR WRVKHLEESY NSLRKEYDVV SRQNQILHDE VMNLRGVILK DHLMKRQMNL NNNQIAGGSQ IYGTDQYNNP
201: MCVASTCWPP LSSQQPYPW
001: MEWSTTSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAG NSYTPGDTQT GPVISVPESE KIMNAYRFPN NNNEMIKKKR LTSGQLASLE RSFQEEIKLD
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
101: SDRKVKLSRE LGLQPRQIAV WFQNRRARWK AKQLEQLYDS LRQEYDVVSR EKQMLHDEVK KLRALLRDQG LIKKQISAGT IKVSGEEDTV EISSVVVAHP
201: RTENMNANQI TGGNQVYGQY NNPMLVASSG WPSYP
Arabidopsis Description
ATHB-51Putative homeobox-leucine zipper protein ATHB-51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.