Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053220.2.1 | Tomato | nucleus | 95.11 | 95.11 |
| PGSC0003DMT400047622 | Potato | nucleus | 54.22 | 57.01 |
| VIT_16s0098g01170.t01 | Wine grape | nucleus | 38.67 | 38.67 |
| PGSC0003DMT400000694 | Potato | nucleus | 41.33 | 36.9 |
| KRH64347 | Soybean | nucleus | 40.0 | 36.73 |
| KRH53589 | Soybean | nucleus | 40.0 | 35.86 |
| GSMUA_Achr1P16280_001 | Banana | nucleus | 31.11 | 31.82 |
| Zm00001d021268_P001 | Maize | nucleus | 33.33 | 31.38 |
| EER99231 | Sorghum | nucleus | 33.78 | 31.28 |
| Zm00001d006195_P001 | Maize | nucleus | 33.78 | 31.15 |
| HORVU5Hr1G081090.1 | Barley | nucleus | 33.78 | 30.4 |
| TraesCS5D01G323100.2 | Wheat | nucleus | 33.33 | 30.12 |
| Os09t0528200-01 | Rice | nucleus | 32.89 | 29.72 |
| TraesCS5A01G316800.1 | Wheat | nucleus | 32.89 | 29.72 |
| TraesCS5B01G317400.1 | Wheat | nucleus | 32.89 | 29.72 |
| TraesCS6A01G240400.1 | Wheat | nucleus | 28.0 | 28.51 |
| GSMUA_Achr1P18670_001 | Banana | nucleus | 35.56 | 27.59 |
| TraesCS6D01G222600.1 | Wheat | nucleus | 27.56 | 27.56 |
| TraesCS6B01G284300.1 | Wheat | nucleus | 27.11 | 26.99 |
| Zm00001d017422_P001 | Maize | nucleus | 28.0 | 26.81 |
| EES05814 | Sorghum | nucleus | 28.89 | 26.0 |
| TraesCS2D01G387300.1 | Wheat | nucleus | 28.0 | 25.93 |
| Zm00001d002799_P001 | Maize | nucleus | 29.78 | 25.67 |
| PGSC0003DMT400002259 | Potato | nucleus | 26.67 | 25.53 |
| Zm00001d025964_P001 | Maize | nucleus | 29.78 | 25.0 |
| PGSC0003DMT400032390 | Potato | nucleus | 19.56 | 24.86 |
| EES11198 | Sorghum | nucleus | 29.78 | 24.81 |
| TraesCS2B01G407600.1 | Wheat | nucleus | 28.44 | 24.62 |
| TraesCS2A01G389400.1 | Wheat | nucleus | 28.89 | 24.53 |
| Os02t0649300-01 | Rice | nucleus | 28.0 | 24.14 |
| HORVU2Hr1G092710.2 | Barley | nucleus | 28.44 | 24.06 |
| PGSC0003DMT400003586 | Potato | nucleus | 25.33 | 23.85 |
| Os04t0541700-02 | Rice | nucleus | 28.89 | 23.55 |
| PGSC0003DMT400017751 | Potato | nucleus | 23.11 | 23.11 |
| PGSC0003DMT400054818 | Potato | nucleus | 20.89 | 22.17 |
| PGSC0003DMT400081296 | Potato | nucleus | 16.89 | 21.23 |
| PGSC0003DMT400007376 | Potato | nucleus | 27.11 | 20.61 |
| PGSC0003DMT400001322 | Potato | nucleus | 25.33 | 20.0 |
| PGSC0003DMT400006949 | Potato | nucleus | 20.89 | 19.34 |
| PGSC0003DMT400065805 | Potato | nucleus | 26.22 | 19.28 |
| HORVU6Hr1G061390.1 | Barley | nucleus | 26.67 | 18.87 |
| PGSC0003DMT400043251 | Potato | nucleus | 27.11 | 18.77 |
| PGSC0003DMT400041655 | Potato | nucleus | 28.89 | 18.68 |
| PGSC0003DMT400045471 | Potato | nucleus | 24.44 | 18.27 |
| PGSC0003DMT400079230 | Potato | nucleus | 23.56 | 18.15 |
| PGSC0003DMT400065207 | Potato | nucleus | 25.78 | 17.74 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102579962 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M1A3K2 | PFAM:PF00046 | PFAM:PF02183 | EnsemblPlantsGene:PGSC0003DMG400005472 |
| PGSC:PGSC0003DMG400005472 | EnsemblPlants:PGSC0003DMT400013968 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF346 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002948C58 | RefSeq:XP_006367352.1 | SEG:seg |
Description
HD-ZIP [Source:PGSC_GENE;Acc:PGSC0003DMG400005472]
Coordinates
chr6:-:38784949..38786646
Molecular Weight (calculated)
26375.5 Da
IEP (calculated)
4.620
GRAVY (calculated)
-0.982
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVAEDSSPV ECSKKKSHED GKRFSDEQVK VLESMFKQKT TLEPSKKLEL ARDLGLQPRQ VAIWFQNRRA RWKTKQLEHE YRRLKDEFDN LAIKFESLKK
101: EKESLLKQLQ ELSDQMENNH AGCSRSQDSI DSEIYTSSEN IEAEVDVKDN IPGCINTSLD HERIKGADSD IEGTLFEHLR WKEEEEFWNM EELGDSFLGS
201: PEHWYAVGPG YSFDLSCENS KWWEF
101: EKESLLKQLQ ELSDQMENNH AGCSRSQDSI DSEIYTSSEN IEAEVDVKDN IPGCINTSLD HERIKGADSD IEGTLFEHLR WKEEEEFWNM EELGDSFLGS
201: PEHWYAVGPG YSFDLSCENS KWWEF
001: MTEGGEYSPA MMSAEPFLTM KKMKKSNHNK NNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELGLQP RQVAIWFQNK RARWKSKQLE TEYNILRQNY
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
101: DNLASQFESL KKEKQALVSE LQRLKEATQK KTQEEERQCS GDQAVVALSS THHESENEEN RRRKPEEVRP EMEMKDDKGH HGVMCDHHDY EDDDNGYSNN
201: IKREYFGGFE EEPDHLMNIV EPADSCLTSS DDWRGFKSDT TTLLDQSSNN YPWRDFWS
Arabidopsis Description
ATHB-7Homeobox-leucine zipper protein ATHB-7 [Source:UniProtKB/Swiss-Prot;Acc:P46897]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.