Factsheet for Os08t0481400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81036	Sorghum	nucleus	50.19	73.37
Os09t0470500-01	Rice	nucleus	68.4	66.43
GSMUA_Achr7P12740_001	Banana	nucleus	42.01	49.56
GSMUA_Achr10P...	Banana	nucleus	45.35	49.39
GSMUA_Achr6P10310_001	Banana	nucleus	37.17	48.31
GSMUA_Achr3P06620_001	Banana	nucleus	47.58	46.72
GSMUA_Achr10P...	Banana	nucleus	32.71	46.32
GSMUA_Achr10P...	Banana	nucleus	44.98	46.01
GSMUA_Achr7P11760_001	Banana	nucleus	41.64	44.44
GSMUA_Achr9P14960_001	Banana	nucleus	45.35	43.42
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	43.12	40.56
Os03t0188900-01	Rice	nucleus	43.87	37.94
Os10t0377300-01	Rice	nucleus	38.66	34.1
Os09t0379600-00	Rice	nucleus	23.05	29.52
Os02t0649300-01	Rice	nucleus	28.62	29.5
Os09t0528200-01	Rice	nucleus	25.28	27.31
Os04t0541700-02	Rice	nucleus	27.88	27.17
Os02t0729700-01	Rice	nucleus	34.2	26.82
Os08t0416000-01	Rice	nucleus	33.83	26.07
Os10t0404900-01	Rice	nucleus	33.83	25.63
Os03t0170600-01	Rice	cytosol, nucleus	4.09	15.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:4345854	EMBL:AK068244	EMBL:AK106818	ProteinID:BAD10283.1
ProteinID:BAF23978.1	ProteinID:BAT05928.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	EnsemblPlantsGene:Os08g0481400	EnsemblPlants:Os08t0481400-01	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF248	UniProt:Q6Z248
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000023B062	RefSeq:XP_015650851.1	SEG:seg	:

Description

HOMEOBOX GENE 20Similar to HAHB-7 (Fragment). (Os08t0481400-01)

Coordinates

chr8:-:23803892..23805451

Molecular Weight (calculated)

28930.4 Da

IEP (calculated)

4.378

GRAVY (calculated)

-0.571

Length

269 amino acids

Sequence
(BLAST)

001: MRSPAALLPV VADGGGGVGV EEEMDVDEDM AMCGGRGGGG GEKKRRLSVE QVRALERSFE TENKLEPERK ARLARDLGLQ PRQVAVWFQN RRARWKTKQL
101: ERDYAALRQS YDALRADHDA LRRDKDALLA EIKELKGKLG DEDAAASFSS VKEEEDPAAS DADPPATGAP QGSSESDSSA VLNDAEILPH KPAPAAAADA
201: AASEETEAVV TGAALLHHAE VFFHGQLLKV DDDEAAFLGD DGAACGGFFA DEHLPSLPWW AEPTEQWTT

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.