Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G133600.1 | Wheat | endoplasmic reticulum | 96.76 | 96.76 |
| Bra026197.1-P | Field mustard | plasma membrane | 57.33 | 59.49 |
| AT1G14660.1 | Thale cress | cytosol, golgi, plasma membrane, plastid | 56.55 | 57.67 |
| TraesCS3D01G022900.1 | Wheat | golgi | 75.88 | 51.23 |
| Solyc04g018090.2.1 | Tomato | golgi, mitochondrion, plasma membrane, plastid | 21.4 | 49.7 |
| GSMUA_Achr8P16670_001 | Banana | cytosol | 68.35 | 46.11 |
| VIT_01s0011g06550.t01 | Wine grape | cytosol | 68.09 | 46.01 |
| KRH42480 | Soybean | mitochondrion | 65.63 | 44.27 |
| PGSC0003DMT400058653 | Potato | plasma membrane | 64.2 | 42.93 |
| CDY04108 | Canola | cytosol, peroxisome, vacuole | 6.61 | 42.86 |
| Bra017430.1-P | Field mustard | plasma membrane | 63.03 | 42.67 |
| PGSC0003DMT400027579 | Potato | extracellular, nucleus, plasma membrane | 7.65 | 41.84 |
| AT2G01980.1 | Thale cress | plasma membrane | 61.22 | 41.19 |
| CDY04109 | Canola | golgi, plasma membrane | 9.6 | 39.78 |
| Solyc04g018100.2.1 | Tomato | cytosol | 26.85 | 29.66 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G135600.1 | EnsemblPlantsGene:TraesCS2D01G135600 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006812 | GO:GO:0008150 | GO:GO:0015299 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| InterPro:Cation/H_exchanger | InterPro:Cation/H_exchanger_CPA1 | PANTHER:PTHR10110 | PANTHER:PTHR10110:SF86 | PFAM:PF00999 | SEG:seg |
| TMHMM:TMhelix | MapMan:24.2.8.1.2 | MapMan:26.6.1.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:79692600..79701662
Molecular Weight (calculated)
84943.1 Da
IEP (calculated)
7.036
GRAVY (calculated)
0.337
Length
771 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAEPDDA VLFAGVSLVL GAACRHLFRG TRVPYTIALL VLGVALXXXE YGTKDGLGKL GAGMRIWANI NPDLLLAAFL PALLFESAFS MEAHQIKKCM
101: AQMLLLAGPG VLMSTFLLGT ALKLTSPYDW NWETSLLLGG LLSATDPVAV VAVLKELGTS KKLSTIIEGE SLMNDGVSVV VYQLFLQMVL GRSFNTGSIL
201: MFLSEVSLGA VALGLAFAII SLLWLGFTFN DTILEMTLTL AVSYIAFYTV QDALKYSGIL TVTALGMFYA AFAKTTFKGD NRRSLHDFWE IVAYIANTII
301: FILSGVIIAD GVLRHNVHFE RHGTSWGFLL LLYFYVQMAR AAVVGALYLL LRYFGYGLDF KEAIIIVWSG LRGAVSLSLA LSVKRASDTA QPFLKPEVGT
401: MFVFFTGGIV FLTLILNGST TQFLLHALGM DNLSVTKLRM SNYARHEILN KTLEAFGDLK DDEELGPADW VTVKKYITGL SNLEDEHAHP HDDNHDHIHT
501: MNLRDGRVRL LNGVQASYWA MLDEGRITQA TANILMRSVD EAMDLVSSRP LCDWNSLQSN VYFPSYYRFL SASMLPQSFI TYFTVQRLES GCYICAAFLR
601: AHRIARRQLQ DFLGDSEIAK IVIDESNAGG EEARKFLEEV RCTFPQLLCV LKTRQVTYAV LTHLSENVQN LWKTGLLEEK EMAHLDDAWQ TDLKKLKRNP
701: QLVKMPRVSD LLGAHPLVSM LPAAVRAPLL SNTKENVKGH GAALYMEGLR ATGIWIVSIG AVKVCFCLRL L
101: AQMLLLAGPG VLMSTFLLGT ALKLTSPYDW NWETSLLLGG LLSATDPVAV VAVLKELGTS KKLSTIIEGE SLMNDGVSVV VYQLFLQMVL GRSFNTGSIL
201: MFLSEVSLGA VALGLAFAII SLLWLGFTFN DTILEMTLTL AVSYIAFYTV QDALKYSGIL TVTALGMFYA AFAKTTFKGD NRRSLHDFWE IVAYIANTII
301: FILSGVIIAD GVLRHNVHFE RHGTSWGFLL LLYFYVQMAR AAVVGALYLL LRYFGYGLDF KEAIIIVWSG LRGAVSLSLA LSVKRASDTA QPFLKPEVGT
401: MFVFFTGGIV FLTLILNGST TQFLLHALGM DNLSVTKLRM SNYARHEILN KTLEAFGDLK DDEELGPADW VTVKKYITGL SNLEDEHAHP HDDNHDHIHT
501: MNLRDGRVRL LNGVQASYWA MLDEGRITQA TANILMRSVD EAMDLVSSRP LCDWNSLQSN VYFPSYYRFL SASMLPQSFI TYFTVQRLES GCYICAAFLR
601: AHRIARRQLQ DFLGDSEIAK IVIDESNAGG EEARKFLEEV RCTFPQLLCV LKTRQVTYAV LTHLSENVQN LWKTGLLEEK EMAHLDDAWQ TDLKKLKRNP
701: QLVKMPRVSD LLGAHPLVSM LPAAVRAPLL SNTKENVKGH GAALYMEGLR ATGIWIVSIG AVKVCFCLRL L
001: MTSIIGAALP YKSPEKAIAS SSYSAENDSS PVDAVIFAGT SLVLGTACRY LFNGTRVPYT VVLLVIGIFL GSLEYGTKHN LGKLGHGIRI WNGINPDLLL
101: AVFLPVLLFE SSFSMDVHQI KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE LGASKKMTTL IDGESLMNDG
201: VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA
301: FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ LSRCVVVGVL YPLLCRSGYG LDWKESIILT WSGLRGAVSL
401: SLALSVKQSS GNSYLSSDTG TRFLFLTGGI VFLTLVVNGS TTQLLLHLLR MDTLTATKKR ILEYTKFEMM KTALKAFENL GDDEELGSAD WPTVIRHISS
501: LKDLEGRQVN PHDGYEAGSL DPTNIMDIRI RFLNGVQAAY WEMLDDGRIT QCTANVLMQS VDEALDLVST SSLSDWRGLE PRVHFPNYYK FLQSKIIPHK
601: LVTHLIVERL ESACYISSAF LRAHRIARQQ LHIFLGNSNI ASTVINESEV EGEEAKQFLE DVRDSFPQVL SVLKTRQVTH YVLNHLNGYI KNLEKVGLLE
701: GKEVSHLHDV VQSDLKKLLR HPPSLKLPNV DDLITSNPLL KDRSSFRSLA IGETDA
101: AVFLPVLLFE SSFSMDVHQI KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE LGASKKMTTL IDGESLMNDG
201: VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA
301: FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ LSRCVVVGVL YPLLCRSGYG LDWKESIILT WSGLRGAVSL
401: SLALSVKQSS GNSYLSSDTG TRFLFLTGGI VFLTLVVNGS TTQLLLHLLR MDTLTATKKR ILEYTKFEMM KTALKAFENL GDDEELGSAD WPTVIRHISS
501: LKDLEGRQVN PHDGYEAGSL DPTNIMDIRI RFLNGVQAAY WEMLDDGRIT QCTANVLMQS VDEALDLVST SSLSDWRGLE PRVHFPNYYK FLQSKIIPHK
601: LVTHLIVERL ESACYISSAF LRAHRIARQQ LHIFLGNSNI ASTVINESEV EGEEAKQFLE DVRDSFPQVL SVLKTRQVTH YVLNHLNGYI KNLEKVGLLE
701: GKEVSHLHDV VQSDLKKLLR HPPSLKLPNV DDLITSNPLL KDRSSFRSLA IGETDA
Arabidopsis Description
NHX8Sodium/hydrogen exchanger 8 [Source:UniProtKB/Swiss-Prot;Acc:Q3YL57]
SUBAcon: [plasma membrane,golgi,plastid,cytosol]
SUBAcon: [plasma membrane,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.