Factsheet for Solyc04g018100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 3
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005270.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01980.1	Solyc08g005270.2.1	AT1G32230.1	17023541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026197.1-P	Field mustard	plasma membrane	28.94	27.19
AT1G14660.1	Thale cress	cytosol, golgi, plasma membrane, plastid	29.37	27.12
TraesCS2D01G135600.1	Wheat	endoplasmic reticulum	29.66	26.85
TraesCS2A01G133600.1	Wheat	endoplasmic reticulum	29.37	26.59
TraesCS7A01G397700.1	Wheat	golgi	36.68	25.4
TraesCS7A01G462000.1	Wheat	plasma membrane	35.53	25.03
GSMUA_Achr8P16670_001	Banana	cytosol	40.54	24.76
OQU79740	Sorghum	cytosol, golgi, plasma membrane	38.68	23.75
AT2G01980.1	Thale cress	plasma membrane	38.83	23.65
Bra017430.1-P	Field mustard	plasma membrane	38.54	23.62
Os12t0641100-04	Rice	cytosol, peroxisome, plasma membrane	38.25	23.26
HORVU3Hr1G003150.1	Barley	vacuole	37.68	23.01
Solyc01g005020.2.1	Tomato	plastid	37.82	22.94
TraesCS7B01G475500.1	Wheat	plastid	37.39	22.87
TraesCSU01G002700.1	Wheat	plasma membrane	33.67	22.15
TraesCS3B01G021600.2	Wheat	plastid	37.39	21.91
Zm00001d031232_P009	Maize	plastid	38.25	20.97
Solyc04g018090.2.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	0.43	0.9

Protein Annotations

MapMan:24.2.8.1.2	MapMan:26.6.1.2	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005886	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0009987	GO:GO:0015299	GO:GO:0015385	GO:GO:0015386
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0051453	GO:GO:0071805	GO:GO:0098719
GO:GO:1902600	InterPro:IPR000595	UniProt:K4BQK9	PFscan:PS50042	PANTHER:PTHR10110	PANTHER:PTHR10110:SF86
SUPFAM:SSF51206	EnsemblPlantsGene:Solyc04g018100.2	EnsemblPlants:Solyc04g018100.2.1	TMHMM:TMhelix	UniParc:UPI00027655E5	InterPro:cNMP-bd-like
InterPro:cNMP-bd_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:9576648..9585923

Molecular Weight (calculated)

77632.8 Da

IEP (calculated)

6.271

GRAVY (calculated)

0.121

Length

698 amino acids

Sequence
(BLAST)

001: MKSAQEEAEA SGILTLVALG MVFAMSKDTH RAGGKQSLHE FWEMIAYIAN TLIFILSGVI IAQSIFSIGN LENNTGRSWG YVFLLYIILQ VARTIVVFAF
101: YPALCYFGYG LNWKEAIIII WSGLRGAVGL ALSLSIKDAS GDPKYLSSET GAMFVFLTGG SVLLTLIING STTQLLLSLF GMDALSESEK TMVNYAKHQL
201: LRKAEEFSRT CSGSNNPFDW ITVGGYASCI KDVCEDTVWP PCTTNHGYLK IDDMKTMRVC FLKATRETYW STFNEGRITE SSISVLMESI DEAIDLATQG
301: LHDWNYISTH LKFPGYYRFF STSVCPPRLT RWLVLKKLQD SCHICSAFIH AHRIARQLLL DYTGDNGNAA IVVAESEVEE IEARKFLENV KNSMPEIIHQ
401: TESREVTFSL LKCLDECLSD MEKDGILTEK VVLHVHDLLQ NDLEKLLRSL PTVRIPKPVE VLSIHPLLAN LSPAIQSDLE CSANSVLKTP GCTLYTKGSK
501: LTSVWLIGNG SVRSRRSPFP INCHVDSTYH RGSVLGLYEA LVGKPYLSDV TDSVAFCVKI KLEWVISVLA RDNAVEELLW KECTVVVSKL LAPDIFKKFS
601: MQEVRSIIDE RSVMNTFSSQ EVIETSHHSI NFLLSGCLRD QSTEQLIECP AVLPCSILSE SIPYSSANGT AESFGSCSYS KYKVVKPARI VRIDISAV

Best Arabidopsis Sequence Match ( AT2G01980.1 )
(BLAST)

0001: MTTVIDATMA YRFLEEATDS SSSSSSSKLE SSPVDAVLFV GMSLVLGIAS RHLLRGTRVP YTVALLVIGI ALGSLEYGAK HNLGKIGHGI RIWNEIDPEL
0101: LLAVFLPALL FESSFSMEVH QIKRCLGQMV LLAVPGVLIS TACLGSLVKV TFPYEWDWKT SLLLGGLLSA TDPVAVVALL KELGASKKLS TIIEGESLMN
0201: DGTAIVVFQL FLKMAMGQNS DWSSIIKFLL KVALGAVGIG LAFGIASVIW LKFIFNDTVI EITLTIAVSY FAYYTAQEWA GASGVLTVMT LGMFYAAFAR
0301: TAFKGDSQKS LHHFWEMVAY IANTLIFILS GVVIAEGILD SDKIAYQGNS WRFLFLLYVY IQLSRVVVVG VLYPLLCRFG YGLDWKESII LVWSGLRGAV
0401: ALALSLSVKQ SSGNSHISKE TGTLFLFFTG GIVFLTLIVN GSTTQFVLRL LRMDILPAPK KRILEYTKYE MLNKALRAFQ DLGDDEELGP ADWPTVESYI
0501: SSLKGSEGEL VHHPHNGSKI GSLDPKSLKD IRMRFLNGVQ ATYWEMLDEG RISEVTANIL MQSVDEALDQ VSTTLCDWRG LKPHVNFPNY YNFLHSKVVP
0601: RKLVTYFAVE RLESACYISA AFLRAHTIAR QQLYDFLGES NIGSIVINES EKEGEEAKKF LEKVRSSFPQ VLRVVKTKQV TYSVLNHLLG YIENLEKVGL
0701: LEEKEIAHLH DAVQTGLKKL LRNPPIVKLP KLSDMITSHP LSVALPPAFC EPLKHSKKEP MKLRGVTLYK EGSKPTGVWL IFDGIVKWKS KILSNNHSLH
0801: PTFSHGSTLG LYEVLTGKPY LCDLITDSMV LCFFIDSEKI LSLQSDSTID DFLWQESALV LLKLLRPQIF ESVAMQELRA LVSTESSKLT TYVTGESIEI
0901: DCNSIGLLLE GFVKPVGIKE ELISSPAALS PSNGNQSFHN SSEASGIMRV SFSQQATQYI VETRARAIIF NIGAFGADRT LHRRPSSLTP PRSSSSDQLQ
1001: RSFRKEHRGL MSWPENIYAK QQQEINKTTL SLSERAMQLS IFGSMVNVYR RSVSFGGIYN NKLQDNLLYK KLPLNPAQGL VSAKSESSIV TKKQLETRKH
1101: ACQLPLKGES STRQNTMVES SDEEDEDEGI VVRIDSPSKI VFRNDL

Arabidopsis Description

NHX7Sodium/hydrogen exchanger 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKW9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.