Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G475500.1 | Wheat | plastid | 80.77 | 75.11 |
| TraesCS2A01G034700.1 | Wheat | plasma membrane | 67.86 | 69.63 |
| Os12t0641100-04 | Rice | cytosol, peroxisome, plasma membrane | 73.52 | 67.94 |
| OQU79740 | Sorghum | cytosol, golgi, plasma membrane | 70.59 | 65.88 |
| Zm00001d031232_P009 | Maize | plastid | 67.2 | 56.01 |
| GSMUA_Achr8P16670_001 | Banana | cytosol | 60.23 | 55.91 |
| VIT_01s0011g06550.t01 | Wine grape | cytosol | 58.81 | 54.69 |
| Bra026197.1-P | Field mustard | plasma membrane | 37.51 | 53.57 |
| KRH42480 | Soybean | mitochondrion | 57.49 | 53.37 |
| AT1G14660.1 | Thale cress | cytosol, golgi, plasma membrane, plastid | 37.13 | 52.12 |
| Bra017430.1-P | Field mustard | plasma membrane | 55.14 | 51.36 |
| PGSC0003DMT400058653 | Potato | plasma membrane | 55.51 | 51.08 |
| AT2G01980.1 | Thale cress | plasma membrane | 54.85 | 50.79 |
| CDY04109 | Canola | golgi, plasma membrane | 6.97 | 39.78 |
| Solyc04g018090.2.1 | Tomato | golgi, mitochondrion, plasma membrane, plastid | 12.35 | 39.46 |
| PGSC0003DMT400027579 | Potato | extracellular, nucleus, plasma membrane | 4.9 | 36.88 |
| CDY04108 | Canola | cytosol, peroxisome, vacuole | 3.86 | 34.45 |
| Solyc04g018100.2.1 | Tomato | cytosol | 22.15 | 33.67 |
Protein Annotations
| Gene3D:2.60.120.10 | MapMan:24.2.8.1.2 | MapMan:26.6.1.2 | InterPro:Cation/H_exchanger | InterPro:Cation/H_exchanger_CPA1 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 | GO:GO:0015299 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR000595 | InterPro:IPR014710 | PFAM:PF00027 |
| PFAM:PF00999 | PFscan:PS50042 | PANTHER:PTHR10110 | PANTHER:PTHR10110:SF86 | InterPro:RmlC-like_jellyroll | SUPFAM:SSF51206 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCSU01G002700 | EnsemblPlants:TraesCSU01G002700.1 | InterPro:cNMP-bd-like | InterPro:cNMP-bd_dom | TIGR:cd00038 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:2653835..2663884
Molecular Weight (calculated)
117477.0 Da
IEP (calculated)
7.736
GRAVY (calculated)
0.096
Length
1061 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEISLSPYLL VGRASTVEQG GQGAEAEAGP DDAVLFFGVS LVLGIASRHL LRGTLLLVLI PVRVAFAFAW AAINPDLLLA VFLPALLFES SFSMEVHQIK
0101: KCLAQMVLLA VPGVVMSTFL LGSLVKFTFP HDWNWKTSFL FSGLLSATDP VAVVTLLKDL GASKKLSTII EGESLMNDGV AVGLAFGIAS VVWLGFIFND
0201: TIIEISLTLA VSYIAFFTAQ DQLEVSGVLA VMTLGMFYAA FAKTAFKGDS QQSLHHFWEM VAYIANTLIF ILSGVVIADG VLQDNFHFER HGTSWAFLLL
0301: LYAFVLVSRA VVISVLYPLL RQFGYGMDVK EAAILVWSGL RGAVALSLSL SVKFVFFTGG IVFLTLILNG SITQFLLRLL GLGKLSATKL RVLKYTRYEM
0401: LNKALEAFGD LRDDEELGPA DWITVKKYIT CLNNLEDEQA HPHDVPDRDD HVHTMHLKVT RVRLLNGVQA AYWGMLEEGR ITQSTANILM RSVDEAMDLV
0501: SSQPLCDWKG LRSNVQFPSY YRFLQMSRLP RRLVTYFTVE RLELGCYISA AFLRAHRIAR RQLHDFLGDS EIAKIVIDES TAAGEEAKKF LEDVRITFPQ
0601: VLRALKTRQV TYAVCSADLK KLKRNPPLVK MPRVRELLNT HPLVGALPAA LRDPLLSNTK ETIKGHGTIL YGEGSRPTGI WLVSTGIVKW TSRRFSTRHS
0701: LDPILSHGST LGLYEALTGK PYICDIITES VVHCFFVEAD TIEQLRQSDP SIEDFMWQES ALVIARIFLP QIFEKMVMRE MRVLISERSS TNIYILGEDI
0801: ELGHNYVGIL LEGFLKTKNL HSIMAPAVLL PSNTDLNLFG LQPSGTVNHV DYCYTAPSYQ VETRARVILF ELGRPGREAD LQRSGSLLPP SLGLPRTQSK
0901: EHVGLLRWPD SFKRSRGPGN PSLADIRDQP GSYSARALQV SMYGGMMDDD IGMHPAQRRR QPRPDNAEAN QKHSASYPKV PSGASTTTTT RRLLSVKSEG
1001: SNVMNRKPAP PLAEGQRLQP RAVAEDGNSS DESTGEEIVV TVDSPSMLSL HPTRSSPPRG N
0101: KCLAQMVLLA VPGVVMSTFL LGSLVKFTFP HDWNWKTSFL FSGLLSATDP VAVVTLLKDL GASKKLSTII EGESLMNDGV AVGLAFGIAS VVWLGFIFND
0201: TIIEISLTLA VSYIAFFTAQ DQLEVSGVLA VMTLGMFYAA FAKTAFKGDS QQSLHHFWEM VAYIANTLIF ILSGVVIADG VLQDNFHFER HGTSWAFLLL
0301: LYAFVLVSRA VVISVLYPLL RQFGYGMDVK EAAILVWSGL RGAVALSLSL SVKFVFFTGG IVFLTLILNG SITQFLLRLL GLGKLSATKL RVLKYTRYEM
0401: LNKALEAFGD LRDDEELGPA DWITVKKYIT CLNNLEDEQA HPHDVPDRDD HVHTMHLKVT RVRLLNGVQA AYWGMLEEGR ITQSTANILM RSVDEAMDLV
0501: SSQPLCDWKG LRSNVQFPSY YRFLQMSRLP RRLVTYFTVE RLELGCYISA AFLRAHRIAR RQLHDFLGDS EIAKIVIDES TAAGEEAKKF LEDVRITFPQ
0601: VLRALKTRQV TYAVCSADLK KLKRNPPLVK MPRVRELLNT HPLVGALPAA LRDPLLSNTK ETIKGHGTIL YGEGSRPTGI WLVSTGIVKW TSRRFSTRHS
0701: LDPILSHGST LGLYEALTGK PYICDIITES VVHCFFVEAD TIEQLRQSDP SIEDFMWQES ALVIARIFLP QIFEKMVMRE MRVLISERSS TNIYILGEDI
0801: ELGHNYVGIL LEGFLKTKNL HSIMAPAVLL PSNTDLNLFG LQPSGTVNHV DYCYTAPSYQ VETRARVILF ELGRPGREAD LQRSGSLLPP SLGLPRTQSK
0901: EHVGLLRWPD SFKRSRGPGN PSLADIRDQP GSYSARALQV SMYGGMMDDD IGMHPAQRRR QPRPDNAEAN QKHSASYPKV PSGASTTTTT RRLLSVKSEG
1001: SNVMNRKPAP PLAEGQRLQP RAVAEDGNSS DESTGEEIVV TVDSPSMLSL HPTRSSPPRG N
001: MTSIIGAALP YKSPEKAIAS SSYSAENDSS PVDAVIFAGT SLVLGTACRY LFNGTRVPYT VVLLVIGIFL GSLEYGTKHN LGKLGHGIRI WNGINPDLLL
101: AVFLPVLLFE SSFSMDVHQI KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE LGASKKMTTL IDGESLMNDG
201: VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA
301: FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ LSRCVVVGVL YPLLCRSGYG LDWKESIILT WSGLRGAVSL
401: SLALSVKQSS GNSYLSSDTG TRFLFLTGGI VFLTLVVNGS TTQLLLHLLR MDTLTATKKR ILEYTKFEMM KTALKAFENL GDDEELGSAD WPTVIRHISS
501: LKDLEGRQVN PHDGYEAGSL DPTNIMDIRI RFLNGVQAAY WEMLDDGRIT QCTANVLMQS VDEALDLVST SSLSDWRGLE PRVHFPNYYK FLQSKIIPHK
601: LVTHLIVERL ESACYISSAF LRAHRIARQQ LHIFLGNSNI ASTVINESEV EGEEAKQFLE DVRDSFPQVL SVLKTRQVTH YVLNHLNGYI KNLEKVGLLE
701: GKEVSHLHDV VQSDLKKLLR HPPSLKLPNV DDLITSNPLL KDRSSFRSLA IGETDA
101: AVFLPVLLFE SSFSMDVHQI KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE LGASKKMTTL IDGESLMNDG
201: VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA
301: FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ LSRCVVVGVL YPLLCRSGYG LDWKESIILT WSGLRGAVSL
401: SLALSVKQSS GNSYLSSDTG TRFLFLTGGI VFLTLVVNGS TTQLLLHLLR MDTLTATKKR ILEYTKFEMM KTALKAFENL GDDEELGSAD WPTVIRHISS
501: LKDLEGRQVN PHDGYEAGSL DPTNIMDIRI RFLNGVQAAY WEMLDDGRIT QCTANVLMQS VDEALDLVST SSLSDWRGLE PRVHFPNYYK FLQSKIIPHK
601: LVTHLIVERL ESACYISSAF LRAHRIARQQ LHIFLGNSNI ASTVINESEV EGEEAKQFLE DVRDSFPQVL SVLKTRQVTH YVLNHLNGYI KNLEKVGLLE
701: GKEVSHLHDV VQSDLKKLLR HPPSLKLPNV DDLITSNPLL KDRSSFRSLA IGETDA
Arabidopsis Description
NHX8Sodium/hydrogen exchanger 8 [Source:UniProtKB/Swiss-Prot;Acc:Q3YL57]
SUBAcon: [plasma membrane,golgi,plastid,cytosol]
SUBAcon: [plasma membrane,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.