Factsheet for TraesCS2A01G034700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01980.1	TraesCS1A01G195400.4	AT1G32230.1	17023541
AT2G01980.1	TraesCS1B01G210300.4	AT1G32230.1	17023541
AT2G01980.1	TraesCS1D01G199200.1	AT1G32230.1	17023541
AT2G01980.1	TraesCS4A01G321300.1	AT1G32230.1	17023541
AT2G01980.1	TraesCS5B01G557500.2	AT1G32230.1	17023541
AT2G01980.1	TraesCS5D01G551800.3	AT1G32230.1	17023541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G023200.2	Wheat	golgi	81.62	73.91
TraesCS7B01G475500.1	Wheat	plastid	80.17	72.66
TraesCSU01G002700.1	Wheat	plasma membrane	69.63	67.86
Os12t0641100-04	Rice	cytosol, peroxisome, plasma membrane	74.95	67.51
OQU79740	Sorghum	cytosol, golgi, plasma membrane	73.21	66.58
TraesCS2A01G133600.1	Wheat	endoplasmic reticulum	48.74	65.37
TraesCS7A01G397700.1	Wheat	golgi	61.41	63.0
TraesCS7A01G462000.1	Wheat	plasma membrane	59.67	62.26
GSMUA_Achr8P16670_001	Banana	cytosol	62.57	56.61
Zm00001d031232_P009	Maize	plastid	68.57	55.7
AT1G14660.1	Thale cress	cytosol, golgi, plasma membrane, plastid	39.46	53.97
VIT_01s0011g06550.t01	Wine grape	cytosol	59.38	53.81
Bra026197.1-P	Field mustard	plasma membrane	38.3	53.3
KRH42480	Soybean	mitochondrion	56.96	51.53
PGSC0003DMT400058653	Potato	plasma membrane	55.71	49.96
Bra017430.1-P	Field mustard	plasma membrane	54.45	49.43
AT2G01980.1	Thale cress	plasma membrane	54.55	49.21
CDY04108	Canola	cytosol, peroxisome, vacuole	5.51	47.9
CDY04109	Canola	golgi, plasma membrane	7.93	44.09
PGSC0003DMT400027579	Potato	extracellular, nucleus, plasma membrane	5.22	38.3

Protein Annotations

Gene3D:2.60.120.10	MapMan:24.2.8.1.2	MapMan:26.6.1.2	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0015299
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR000595	InterPro:IPR014710	PFAM:PF00027
PFAM:PF00999	PFscan:PS50042	PANTHER:PTHR10110	PANTHER:PTHR10110:SF86	InterPro:RmlC-like_jellyroll	SUPFAM:SSF51206
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G034700	EnsemblPlants:TraesCS2A01G034700.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	TIGR:cd00038
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:15185525..15223170

Molecular Weight (calculated)

114581.0 Da

IEP (calculated)

6.317

GRAVY (calculated)

0.074

Length

1034 amino acids

Sequence
(BLAST)

0001: MEEPGSSPDD AVLFFGVSLV LGIGSRHLLR GTRVPYTAAL LVLGVALGGL EYGTKHGLGK LGAGIRIWAA INPDLLLTVL LPALLFESSF SMEVHQIKKC
0101: MAQMVLLAVP GVVISTVLLG TAVKLTFPYD WNWETSFLFS GLLSATDPVA VVALLKDLGA SKKLSTIIEG ESLMNDGTAI VVYQLFYRMV LGRTYDAGSI
0201: IKFLSEVPFG AVALGLAFGI ASVLWRSFIF NDTIIEISLT LAASYIAFFT AQDALEVSGV LAVMTLGMLY AAFAQTAFKG DNQQSLHHFW EMVAYIANTL
0301: IFILSGVIIA DGVLQDNIHF ERQASDAVQP YLNPEVGTMF VFFTGGIMFL TLTLNGSTTQ LLLHLLGLRK FTATKFRVLK YTRYGMLNKA LEAFGDLKDD
0401: EELGTVDWIT VKKYITCLNN LEDVQAHPHD VPDKDDHTHT MNLLDTRVRL LNGVQAAYFG MLEEGRITQS TTNILMRSVD EAKDLVSSQP LCDWKVLRSN
0501: VQFSNYYRFL QMSRLPQRLI TYFTVERLEL GCCTCAAFLN AHRTARRQLH DFLGESEMAR IVIDESTAAG EEAKKFLEDV RVTFPQVLGA LMTRQVTYAV
0601: LTHLSKYIQD LRKTGLLEEE EMVHLDDALQ TDLKKLKRNP PMVKMPRVSE LLSSHPLVGA LPSAVRGLLL SNARETIKGH GQILYREGSR PTGIWLVSAG
0701: IVKWTSQRLS RRHSLDPILP HGSTLGLYEA LTGKPYICDV TTESVVHCFF IEAEKIEQLR QSDPSAEDFM WQESALVIAM IFLPQIFEKM AMRKMRVLLS
0801: ERSSMNIYIN GEEFELGHNY IGILLEGFLK TTHQHLITPP AVLLPSSADL NLSGLQSSAM SHIDYYYTAT SYQVEARTRA ILIEIDMPDI ESDLQTSASL
0901: LSPSPTLGPP PTQSKEHMDD MHCAQRRLSL NRAEANHKHI ASYAKAPSRM ASSTQPRLLV ARSEGSNATM NTTSALYPAL VPFPPLEAAR QRRVTVAEDD
1001: NSSDESAGEE VIVKVDSPSM LSFHRTTSVP PRGD

Best Arabidopsis Sequence Match ( AT1G14660.1 )
(BLAST)

001: MTSIIGAALP YKSPEKAIAS SSYSAENDSS PVDAVIFAGT SLVLGTACRY LFNGTRVPYT VVLLVIGIFL GSLEYGTKHN LGKLGHGIRI WNGINPDLLL
101: AVFLPVLLFE SSFSMDVHQI KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE LGASKKMTTL IDGESLMNDG
201: VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA
301: FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ LSRCVVVGVL YPLLCRSGYG LDWKESIILT WSGLRGAVSL
401: SLALSVKQSS GNSYLSSDTG TRFLFLTGGI VFLTLVVNGS TTQLLLHLLR MDTLTATKKR ILEYTKFEMM KTALKAFENL GDDEELGSAD WPTVIRHISS
501: LKDLEGRQVN PHDGYEAGSL DPTNIMDIRI RFLNGVQAAY WEMLDDGRIT QCTANVLMQS VDEALDLVST SSLSDWRGLE PRVHFPNYYK FLQSKIIPHK
601: LVTHLIVERL ESACYISSAF LRAHRIARQQ LHIFLGNSNI ASTVINESEV EGEEAKQFLE DVRDSFPQVL SVLKTRQVTH YVLNHLNGYI KNLEKVGLLE
701: GKEVSHLHDV VQSDLKKLLR HPPSLKLPNV DDLITSNPLL KDRSSFRSLA IGETDA

Arabidopsis Description

NHX8Sodium/hydrogen exchanger 8 [Source:UniProtKB/Swiss-Prot;Acc:Q3YL57]
SUBAcon: [plasma membrane,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.