Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 2
- plastid 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400038368 | |
PGSC0003DMT400043197 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G01980.1 | PGSC0003DMT400038368 | AT1G32230.1 | 17023541 |
AT2G01980.1 | PGSC0003DMT400043197 | AT1G32230.1 | 17023541 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G135600.1 | Wheat | endoplasmic reticulum | 41.84 | 7.65 |
Bra026197.1-P | Field mustard | plasma membrane | 38.3 | 7.27 |
TraesCS2A01G133600.1 | Wheat | endoplasmic reticulum | 39.01 | 7.13 |
AT1G14660.1 | Thale cress | cytosol, golgi, plasma membrane, plastid | 37.59 | 7.01 |
TraesCS7A01G462000.1 | Wheat | plasma membrane | 40.43 | 5.75 |
TraesCS7B01G475500.1 | Wheat | plastid | 45.39 | 5.61 |
TraesCS7A01G397700.1 | Wheat | golgi | 39.72 | 5.56 |
Os12t0641100-04 | Rice | cytosol, peroxisome, plasma membrane | 43.26 | 5.31 |
TraesCS2A01G034700.1 | Wheat | plasma membrane | 38.3 | 5.22 |
TraesCS3A01G023200.2 | Wheat | golgi | 41.13 | 5.08 |
TraesCS3D01G022900.1 | Wheat | golgi | 41.13 | 5.08 |
OQU79740 | Sorghum | cytosol, golgi, plasma membrane | 40.43 | 5.01 |
GSMUA_Achr8P16670_001 | Banana | cytosol | 40.43 | 4.99 |
TraesCSU01G002700.1 | Wheat | plasma membrane | 36.88 | 4.9 |
TraesCS3B01G021600.2 | Wheat | plastid | 41.13 | 4.87 |
PGSC0003DMT400058653 | Potato | plasma membrane | 39.72 | 4.86 |
AT2G01980.1 | Thale cress | plasma membrane | 36.88 | 4.54 |
Bra017430.1-P | Field mustard | plasma membrane | 36.17 | 4.48 |
Zm00001d031232_P009 | Maize | plastid | 39.72 | 4.4 |
HORVU7Hr1G085980.11 | Barley | plastid | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400027579 | EnsemblPlantsGene:PGSC0003DMG400010630 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PGSC:PGSC0003DMG400010630 |
TMHMM:TMhelix | UniParc:UPI000295998C | UniProt:M1APV9 | MapMan:35.1 | : | : |
Description
Salt overly sensitive 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400010630]
Coordinates
chr4:+:12129947..12133788
Molecular Weight (calculated)
15717.9 Da
IEP (calculated)
4.814
GRAVY (calculated)
0.035
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFFLNFQDA SGDPKYLSSE TGAMFVFLTG GSVLLTLIIN GSTTQLLLSL FGMDALSESE KIMVNYAKHQ LLRKAEEFSR ICSGSNNPFD WITVGGYATC
101: IKDVCEDTVW PPCTTNHGYL EINDMKTMRV CFLKGQQLHP D
101: IKDVCEDTVW PPCTTNHGYL EINDMKTMRV CFLKGQQLHP D
001: MTSIIGAALP YKSPEKAIAS SSYSAENDSS PVDAVIFAGT SLVLGTACRY LFNGTRVPYT VVLLVIGIFL GSLEYGTKHN LGKLGHGIRI WNGINPDLLL
101: AVFLPVLLFE SSFSMDVHQI KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE LGASKKMTTL IDGESLMNDG
201: VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA
301: FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ LSRCVGCCFA VARSICKTLG HMIQQSSGNS YLSSDTGTRF
401: LFLTGGIVFL TLVVNGSTTQ LLLHLLRMDT LTATKKRILE YTKFEMMKTA LKAFENLGDD EELGSADWPT VIRHISSLKD LEGRQVNPHD GYEAGSLDPT
501: NIMDIRIRFL NGVQAAYWEM LDDGRITQCT ANVLMQSVDE ALDLVSTSSL SDWRGLEPRV HFPNYYKFLQ SKIIPHKLVT HLIVERLESA CYISSAFLRA
601: HRIARQQLHI FLGNSNIAST VINESEVEGE EAKQFLEDVR DSFPQVLSVL KTRQVTHYVL NHLNGYIKNL EKVGLLEGKE VSHLHDVVQS DLKKLLRHPP
701: SLKLPNVDDL ITSNPLLKDR SSFRSLAIGE TDA
101: AVFLPVLLFE SSFSMDVHQI KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE LGASKKMTTL IDGESLMNDG
201: VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA
301: FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ LSRCVGCCFA VARSICKTLG HMIQQSSGNS YLSSDTGTRF
401: LFLTGGIVFL TLVVNGSTTQ LLLHLLRMDT LTATKKRILE YTKFEMMKTA LKAFENLGDD EELGSADWPT VIRHISSLKD LEGRQVNPHD GYEAGSLDPT
501: NIMDIRIRFL NGVQAAYWEM LDDGRITQCT ANVLMQSVDE ALDLVSTSSL SDWRGLEPRV HFPNYYKFLQ SKIIPHKLVT HLIVERLESA CYISSAFLRA
601: HRIARQQLHI FLGNSNIAST VINESEVEGE EAKQFLEDVR DSFPQVLSVL KTRQVTHYVL NHLNGYIKNL EKVGLLEGKE VSHLHDVVQS DLKKLLRHPP
701: SLKLPNVDDL ITSNPLLKDR SSFRSLAIGE TDA
Arabidopsis Description
NHX8Sodium/hydrogen exchanger 8 [Source:UniProtKB/Swiss-Prot;Acc:Q3YL57]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.