Factsheet for Solyc04g018090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid

Predictor Summary:

plastid 2
golgi 1
plasma membrane 2
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005270.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01980.1	Solyc08g005270.2.1	AT1G32230.1	17023541

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026197.1-P	Field mustard	plasma membrane	49.4	22.07
AT1G14660.1	Thale cress	cytosol, golgi, plasma membrane, plastid	49.1	21.56
TraesCS2D01G135600.1	Wheat	endoplasmic reticulum	49.7	21.4
TraesCS2A01G133600.1	Wheat	endoplasmic reticulum	47.59	20.49
TraesCS7A01G462000.1	Wheat	plasma membrane	47.89	16.04
TraesCS7A01G397700.1	Wheat	golgi	48.19	15.87
HORVU3Hr1G003150.1	Barley	vacuole	53.01	15.4
Solyc01g005020.2.1	Tomato	plastid	53.01	15.29
Bra017430.1-P	Field mustard	plasma membrane	52.41	15.28
TraesCS7B01G475500.1	Wheat	plastid	52.41	15.25
OQU79740	Sorghum	cytosol, golgi, plasma membrane	52.11	15.22
Os12t0641100-04	Rice	cytosol, peroxisome, plasma membrane	52.41	15.16
AT2G01980.1	Thale cress	plasma membrane	51.81	15.01
TraesCS3B01G021600.2	Wheat	plastid	53.31	14.86
GSMUA_Achr8P16670_001	Banana	cytosol	50.3	14.61
Zm00001d031232_P009	Maize	plastid	47.59	12.41
TraesCSU01G002700.1	Wheat	plasma membrane	39.46	12.35
Solyc04g018100.2.1	Tomato	cytosol	0.9	0.43

Protein Annotations

Gene3D:1.20.1530.20	MapMan:26.6.1.2	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810
GO:GO:0006812	GO:GO:0008150	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987	GO:GO:0015297
GO:GO:0015299	GO:GO:0015385	GO:GO:0015386	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725
GO:GO:0051453	GO:GO:0055085	GO:GO:0071805	GO:GO:0098719	GO:GO:1902600	InterPro:IPR038770
UniProt:K4BQK8	InterPro:Na+/solute_symporter_sf	PFAM:PF00999	PANTHER:PTHR10110	PANTHER:PTHR10110:SF86	EnsemblPlantsGene:Solyc04g018090.2
EnsemblPlants:Solyc04g018090.2.1	TMHMM:TMhelix	UniParc:UPI00027655E4	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:9572686..9575968

Molecular Weight (calculated)

35953.4 Da

IEP (calculated)

8.337

GRAVY (calculated)

0.596

Length

332 amino acids

Sequence
(BLAST)

001: MKCQFGFGFG LSWLRNDKMS GKYSTHHVFE QFPNSAIMGT VEEGTLPYNL WQGESSSSSS SSNPSDAVLF GGICLLVGVS CRTLLRRTTI PYTVVLLILG
101: IALGSLEFGS IYRLGKLGNG IRIWADIDAD LLLAVFLPIL IFEGAFSMQV HQIKKCMAQM LLLAGPGVLI STGLIGAAVK LIFPYDWNWN TSLLLGAILS
201: ATDPVAVVAL LKDLGASKKL STIVEGESMM NDGAAIVVYQ LFYRMVLGKS SGCVAVLEYL AEGSLGSVLI GIVFGMASLL WLRFIYNDTL TDFSLALTVS
301: YIAYYTVARK IRGQLGFFVT QIGRVSKNSL CL

Best Arabidopsis Sequence Match ( AT2G01980.1 )
(BLAST)

0001: MTTVIDATMA YRFLEEATDS SSSSSSSKLE SSPVDAVLFV GMSLVLGIAS RHLLRGTRVP YTVALLVIGI ALGSLEYGAK HNLGKIGHGI RIWNEIDPEL
0101: LLAVFLPALL FESSFSMEVH QIKRCLGQMV LLAVPGVLIS TACLGSLVKV TFPYEWDWKT SLLLGGLLSA TDPVAVVALL KELGASKKLS TIIEGESLMN
0201: DGTAIVVFQL FLKMAMGQNS DWSSIIKFLL KVALGAVGIG LAFGIASVIW LKFIFNDTVI EITLTIAVSY FAYYTAQEWA GASGVLTVMT LGMFYAAFAR
0301: TAFKGDSQKS LHHFWEMVAY IANTLIFILS GVVIAEGILD SDKIAYQGNS WRFLFLLYVY IQLSRVVVVG VLYPLLCRFG YGLDWKESII LVWSGLRGAV
0401: ALALSLSVKQ SSGNSHISKE TGTLFLFFTG GIVFLTLIVN GSTTQFVLRL LRMDILPAPK KRILEYTKYE MLNKALRAFQ DLGDDEELGP ADWPTVESYI
0501: SSLKGSEGEL VHHPHNGSKI GSLDPKSLKD IRMRFLNGVQ ATYWEMLDEG RISEVTANIL MQSVDEALDQ VSTTLCDWRG LKPHVNFPNY YNFLHSKVVP
0601: RKLVTYFAVE RLESACYISA AFLRAHTIAR QQLYDFLGES NIGSIVINES EKEGEEAKKF LEKVRSSFPQ VLRVVKTKQV TYSVLNHLLG YIENLEKVGL
0701: LEEKEIAHLH DAVQTGLKKL LRNPPIVKLP KLSDMITSHP LSVALPPAFC EPLKHSKKEP MKLRGVTLYK EGSKPTGVWL IFDGIVKWKS KILSNNHSLH
0801: PTFSHGSTLG LYEVLTGKPY LCDLITDSMV LCFFIDSEKI LSLQSDSTID DFLWQESALV LLKLLRPQIF ESVAMQELRA LVSTESSKLT TYVTGESIEI
0901: DCNSIGLLLE GFVKPVGIKE ELISSPAALS PSNGNQSFHN SSEASGIMRV SFSQQATQYI VETRARAIIF NIGAFGADRT LHRRPSSLTP PRSSSSDQLQ
1001: RSFRKEHRGL MSWPENIYAK QQQEINKTTL SLSERAMQLS IFGSMVNVYR RSVSFGGIYN NKLQDNLLYK KLPLNPAQGL VSAKSESSIV TKKQLETRKH
1101: ACQLPLKGES STRQNTMVES SDEEDEDEGI VVRIDSPSKI VFRNDL

Arabidopsis Description

NHX7Sodium/hydrogen exchanger 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKW9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.