Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34785 | Soybean | cytosol | 8.67 | 50.0 |
| Zm00001d001894_P001 | Maize | mitochondrion | 43.56 | 48.82 |
| KXG27398 | Sorghum | plastid | 42.86 | 47.29 |
| Os04t0670900-00 | Rice | nucleus | 43.09 | 47.18 |
| TraesCS2B01G579700.1 | Wheat | nucleus, plastid | 41.69 | 43.2 |
| TraesCS2D01G549900.1 | Wheat | nucleus, plastid | 40.75 | 42.54 |
| TraesCS2A01G549300.1 | Wheat | nucleus, plastid | 40.52 | 42.51 |
| KRG91999 | Soybean | nucleus | 32.08 | 41.39 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 25.06 | 34.29 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 26.0 | 32.55 |
| GSMUA_Achr10P... | Banana | nucleus | 16.63 | 20.88 |
| GSMUA_Achr8P00510_001 | Banana | nucleus | 14.99 | 20.0 |
| GSMUA_Achr6P16420_001 | Banana | golgi, nucleus, plastid | 6.09 | 11.66 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP09280_001 | EnsemblPlants:GSMUA_AchrUn_randomT09280_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG09280_001 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR33492 | PANTHER:PTHR33492:SF2 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | UniParc:UPI0002956676 |
| UniProt:M0U7N8 | MapMan:35.2 | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09280_001]
Coordinates
chrchrUn_random:-:43076792..43078845
Molecular Weight (calculated)
48422.9 Da
IEP (calculated)
10.811
GRAVY (calculated)
-0.589
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQNVRVVWS ISTVRGERRK KGSFGEGAIR KRKRHNACFP NAAISLNPVP LPFPLPLVVR FPFLSLVIER EKKRKIATRA DAHKAMSEAT DQNALALLHH
101: HHHPPPAQPH PLVSPSSAGA IVRDYRKGNW TLHETLVLIT AKRLDDERRA GVSSSPAGGG GALRSAEQRW KWVENYCWRN GCLRSQNQCN DKWDNLLRDY
201: KKVRGYESRV SAAAGASGEL PSYWTMERHE RKERNLPTNL AVEVFEALTD VLTRRAARRA NATTKMSNAI SYDASQAFHL AMQPCCIIRT KRLNVFFGFY
301: VSKRTAFFLL HSCVVHRAAE MSESEENEGP ATTTTTEEPD TKRRRLRRLG SSVVRSATVL ARTMLACEEK RELRHRELVE LQERRLRLEE DRTEVRRQGF
401: AGLISAVDNL SGAIHALVAD RRSGDHR
101: HHHPPPAQPH PLVSPSSAGA IVRDYRKGNW TLHETLVLIT AKRLDDERRA GVSSSPAGGG GALRSAEQRW KWVENYCWRN GCLRSQNQCN DKWDNLLRDY
201: KKVRGYESRV SAAAGASGEL PSYWTMERHE RKERNLPTNL AVEVFEALTD VLTRRAARRA NATTKMSNAI SYDASQAFHL AMQPCCIIRT KRLNVFFGFY
301: VSKRTAFFLL HSCVVHRAAE MSESEENEGP ATTTTTEEPD TKRRRLRRLG SSVVRSATVL ARTMLACEEK RELRHRELVE LQERRLRLEE DRTEVRRQGF
401: AGLISAVDNL SGAIHALVAD RRSGDHR
001: MADQSGGLVM MREYRKGNWT LNETMVLIEA KRMDDERRMR RSIGLPPPEQ QQDIRSNKPA ELRWKWIEDY CWRKGCMRSQ NQCNDKWDNL MRDYKKVREY
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
101: ERRRVESSIT AGESSSSSAP AGETASYWKM EKSERKERSL PSNMLPQTYQ ALFEVVESKT LPSSTAVTAV TAAVAAAAAA ISSGNGSGGG QIQKVIQQGL
201: GFVVPKVHQI IQQQPVLLPL QPPPPPPPSQ PLPRPLLLPP PPPPSFHAQP ILPTKDSSTD SDTSEYSDTS PAKRRRTMPT TTTAGPSGGG VDVEEVGRSK
301: RDEETTVAAA LSRSVSVIAN AIRESEERQD RRHKEVMNVQ ERRLKIEESN VEMNREGMNG LVEAINKLAS SIFALASSSR HNN
Arabidopsis Description
Hydroxyproline-rich glycoprotein family protein [Source:UniProtKB/TrEMBL;Acc:F4I9C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.