Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g069390.1.1 | Tomato | nucleus | 39.71 | 44.12 |
| AT1G31310.1 | Thale cress | nucleus | 48.53 | 43.08 |
| PGSC0003DMT400033627 | Potato | nucleus | 39.71 | 39.94 |
| Solyc02g030460.2.1 | Tomato | nucleus | 38.82 | 39.05 |
| VIT_10s0042g00940.t01 | Wine grape | cytosol | 33.53 | 38.91 |
| GSMUA_Achr4P32040_001 | Banana | nucleus | 36.18 | 36.07 |
| GSMUA_Achr5P02140_001 | Banana | nucleus | 32.94 | 35.9 |
| PGSC0003DMT400054486 | Potato | nucleus | 13.24 | 34.88 |
| Zm00001d034953_P001 | Maize | nucleus | 20.0 | 33.33 |
| TraesCS4A01G294700.2 | Wheat | nucleus | 30.0 | 30.91 |
| TraesCS4B01G019200.1 | Wheat | nucleus | 28.82 | 29.61 |
| HORVU4Hr1G002970.1 | Barley | nucleus | 28.53 | 29.13 |
| TraesCS4D01G017200.2 | Wheat | nucleus | 27.94 | 28.79 |
| Zm00001d013588_P001 | Maize | nucleus | 29.71 | 28.06 |
| EER93695 | Sorghum | nucleus | 28.82 | 27.22 |
| Os03t0666300-00 | Rice | nucleus | 23.24 | 20.2 |
| AT2G33550.1 | Thale cress | cytosol | 17.94 | 19.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | EntrezGene:818133 | ProteinID:AAD15456.1 | ProteinID:AEC09135.1 | ArrayExpress:AT2G35640 |
| EnsemblPlantsGene:AT2G35640 | RefSeq:AT2G35640 | TAIR:AT2G35640 | RefSeq:AT2G35640-TAIR-G | EnsemblPlants:AT2G35640.1 | TAIR:AT2G35640.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_181107.1 | PFAM:PF13837 | PO:PO:0000293 | PFscan:PS50090 |
| PANTHER:PTHR33492 | PANTHER:PTHR33492:SF2 | UniProt:Q9ZQN7 | UniParc:UPI00000A70B3 | SEG:seg | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQN7]
Coordinates
chr2:+:14982835..14984339
Molecular Weight (calculated)
38307.4 Da
IEP (calculated)
9.050
GRAVY (calculated)
-0.838
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
101: VESSFNTVTS SSYWKMDKTE RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM AQPMHQIPTT IVLSLPPPPP
201: QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT
301: EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.