Factsheet for Bra030749.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31119	Canola	nucleus	85.32	97.38
Bra031651.1-P	Field mustard	nucleus	89.91	85.96
Bra018589.1-P	Field mustard	nucleus	84.4	83.64
CDY32142	Canola	mitochondrion, nucleus	96.33	70.95
Bra003334.1-P	Field mustard	nucleus	50.46	59.78
VIT_14s0128g00250.t01	Wine grape	nucleus	71.56	59.32
VIT_05s0020g02790.t01	Wine grape	nucleus	71.1	59.16
PGSC0003DMT400008660	Potato	nucleus	66.06	57.14
PGSC0003DMT400023211	Potato	nucleus	66.06	56.25
Solyc01g079870.2.1	Tomato	nucleus	66.51	56.2
Os09t0480700-01	Rice	nucleus	43.12	55.95
Bra018046.1-P	Field mustard	nucleus	50.92	50.23
GSMUA_Achr4P03920_001	Banana	nucleus	31.19	50.0
TraesCS7D01G237100.1	Wheat	nucleus	45.41	49.75
TraesCS7B01G135000.1	Wheat	nucleus	45.41	49.75
TraesCS7A01G239500.1	Wheat	nucleus	45.41	49.75
Zm00001d020874_P001	Maize	extracellular	45.41	49.5
TraesCS5A01G256500.1	Wheat	nucleus	45.87	49.26
TraesCS5B01G255900.1	Wheat	nucleus	45.87	49.26
EER96945	Sorghum	nucleus	45.41	49.01
TraesCS5D01G265000.1	Wheat	nucleus	45.41	48.77
Zm00001d052838_P001	Maize	nucleus	44.04	47.52
EES15444	Sorghum	nucleus	43.58	47.26
Zm00001d031310_P001	Maize	nucleus	43.12	47.0
Os08t0496500-01	Rice	nucleus	44.04	46.83
GSMUA_Achr4P13170_001	Banana	nucleus	30.73	45.89
GSMUA_Achr3P11990_001	Banana	nucleus	31.65	43.4
Bra038636.1-P	Field mustard	nucleus, plastid	52.75	42.28
HORVU7Hr1G048760.3	Barley	plastid	45.41	38.08
GSMUA_Achr1P19420_001	Banana	nucleus	33.49	37.44
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	36.7	28.67
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	49.54	15.84

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EnsemblPlantsGene:Bra030749	EnsemblPlants:Bra030749.1	EnsemblPlants:Bra030749.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003712	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009738	GO:GO:0009740
GO:GO:0009791	GO:GO:0009987	GO:GO:0010029	GO:GO:0043565	GO:GO:0046982	GO:GO:0048574
GO:GO:1903506	GO:GO:2000306	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4EPM9	PFAM:PF00808
PANTHER:PTHR10252	PANTHER:PTHR10252:SF75	SUPFAM:SSF47113	UniParc:UPI000254699F	SEG:seg	:

Description

AT1G08970 (E=2e-086) HAP5C, NF-YC9 | NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor

Coordinates

chrA08:-:20507192..20507848

Molecular Weight (calculated)

24413.8 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.633

Length

218 amino acids

Sequence
(BLAST)

001: MDQQEHGQSR AMNYGTNPYQ TGSVGPTAPS GQMAFHQHHQ QQQLTQQLQV FWQNQFKEIE NTTDFKNHSL PLARIKKIMK ADEDVRMISA EAPVVFARAC
101: EMFILELTLR SWNHTEENKR RTLQKNDIAA AVTRTDIFDF LVDIVPREDL RDEVLGSIPR GTVPEASAAG YPYGYLPSGT APVGNAGMVM GNPGSAYPPN
201: LYMGQPMWQH QGPGQPDQ

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.