Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400023211 | Potato | nucleus | 98.06 | 98.83 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 79.84 | 78.63 |
| AT1G54830.3 | Thale cress | nucleus | 57.36 | 68.2 |
| CDX93525 | Canola | nucleus | 57.36 | 67.27 |
| Bra031651.1-P | Field mustard | nucleus | 59.3 | 67.11 |
| CDY06341 | Canola | nucleus | 59.3 | 67.11 |
| Bra030749.1-P | Field mustard | nucleus | 56.2 | 66.51 |
| Bra018589.1-P | Field mustard | nucleus | 56.59 | 66.36 |
| AT1G08970.4 | Thale cress | nucleus | 59.3 | 66.23 |
| CDY31119 | Canola | nucleus | 48.06 | 64.92 |
| Os09t0480700-01 | Rice | nucleus | 39.92 | 61.31 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 32.17 | 61.03 |
| EER96945 | Sorghum | nucleus | 44.57 | 56.93 |
| CDY22654 | Canola | cytosol | 55.81 | 56.69 |
| Zm00001d020874_P001 | Maize | extracellular | 43.8 | 56.5 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 43.41 | 56.28 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 43.41 | 56.28 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 43.41 | 56.28 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 44.19 | 56.16 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 43.8 | 55.66 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 43.41 | 55.17 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 31.01 | 54.79 |
| Os08t0496500-01 | Rice | nucleus | 43.02 | 54.15 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 32.95 | 53.46 |
| Zm00001d031310_P001 | Maize | nucleus | 40.31 | 52.0 |
| EES15444 | Sorghum | nucleus | 40.31 | 51.74 |
| Solyc06g072040.1.1 | Tomato | nucleus | 46.51 | 51.72 |
| Zm00001d052838_P001 | Maize | nucleus | 39.92 | 50.99 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 45.35 | 50.87 |
| CDY32142 | Canola | mitochondrion, nucleus | 56.59 | 49.32 |
| Solyc08g007960.1.1 | Tomato | mitochondrion | 23.26 | 48.39 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 59.69 | 47.09 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 33.72 | 44.62 |
| Solyc11g016920.1.1 | Tomato | cytosol | 23.26 | 43.48 |
| HORVU7Hr1G048760.3 | Barley | plastid | 43.41 | 43.08 |
| Solyc03g110840.1.1 | Tomato | nucleus | 24.03 | 38.27 |
| Solyc02g021330.1.1 | Tomato | cytosol | 22.48 | 37.91 |
| Solyc03g110850.1.1 | Tomato | cytosol | 23.64 | 37.42 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 36.05 | 33.33 |
| Solyc11g016910.1.1 | Tomato | nucleus | 11.24 | 31.18 |
| Solyc03g111460.1.1 | Tomato | cytosol | 32.17 | 28.82 |
| Solyc03g111470.1.1 | Tomato | nucleus | 29.84 | 28.21 |
| Solyc03g111450.1.1 | Tomato | nucleus | 32.95 | 26.73 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 52.71 | 19.94 |
| Solyc02g091030.2.1 | Tomato | nucleus | 24.81 | 9.45 |
Protein Annotations
| EnsemblPlants:Solyc01g079870.2.1 | EnsemblPlantsGene:Solyc01g079870.2 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF75 | PFAM:PF00808 | SEG:seg |
| SUPFAM:SSF47113 | UniParc:UPI0001EE369A | UniProt:K4AXN2 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr1:-:79004425..79005991
Molecular Weight (calculated)
28476.9 Da
IEP (calculated)
6.149
GRAVY (calculated)
-0.460
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQHGNGQPP GIGVVTSSAP IYGAPYQANQ MAGPSPPAVS AGAIQSPQAA GLAASSAQMA QHQLAYQHIH QQQQQQLQQQ LQTFWANQYQ EIEHVTDFKN
101: HSLPLARIKK IMKADEDVRM ISAEAPVVFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAT IPRGTLPVGG
201: PTEGLPFYYG MPPQSAQPIG APGMYMGKPV DQALYAQQPR PYMAQPIWPQ QQQPPSDS
101: HSLPLARIKK IMKADEDVRM ISAEAPVVFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAT IPRGTLPVGG
201: PTEGLPFYYG MPPQSAQPIG APGMYMGKPV DQALYAQQPR PYMAQPIWPQ QQQPPSDS
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
Arabidopsis Description
NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.