Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 98.26 | 98.26 |
| Solyc06g072040.1.1 | Tomato | nucleus | 89.13 | 88.36 |
| CDY08084 | Canola | nucleus | 74.35 | 77.38 |
| Bra018046.1-P | Field mustard | nucleus | 74.35 | 77.38 |
| CDY05857 | Canola | nucleus | 73.91 | 76.92 |
| KRH54177 | Soybean | nucleus | 74.78 | 75.11 |
| KRH63772 | Soybean | nucleus | 72.17 | 73.78 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 60.0 | 72.63 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 79.13 | 71.65 |
| GSMUA_Achr10P... | Banana | nucleus | 57.83 | 68.56 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 74.35 | 62.87 |
| CDX84419 | Canola | plastid | 73.91 | 60.07 |
| CDY66668 | Canola | plastid | 70.0 | 58.97 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 58.7 | 56.02 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 58.7 | 55.79 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 58.7 | 55.79 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 58.26 | 55.6 |
| Os03t0251350-00 | Rice | nucleus | 58.7 | 54.88 |
| Zm00001d028432_P001 | Maize | nucleus | 57.39 | 53.88 |
| KXG39763 | Sorghum | nucleus | 57.39 | 53.44 |
| Solyc08g007960.1.1 | Tomato | mitochondrion | 26.09 | 48.39 |
| Solyc01g079870.2.1 | Tomato | nucleus | 50.87 | 45.35 |
| Solyc11g016920.1.1 | Tomato | cytosol | 26.96 | 44.93 |
| Solyc03g110850.1.1 | Tomato | cytosol | 31.3 | 44.17 |
| Solyc02g021330.1.1 | Tomato | cytosol | 27.39 | 41.18 |
| Solyc03g110840.1.1 | Tomato | nucleus | 28.7 | 40.74 |
| Solyc11g016910.1.1 | Tomato | nucleus | 14.35 | 35.48 |
| Solyc03g111470.1.1 | Tomato | nucleus | 37.39 | 31.5 |
| Solyc03g111460.1.1 | Tomato | cytosol | 39.13 | 31.25 |
| Solyc03g111450.1.1 | Tomato | nucleus | 42.17 | 30.5 |
| Solyc02g091030.2.1 | Tomato | nucleus | 27.39 | 9.31 |
Protein Annotations
| EnsemblPlants:Solyc03g110860.2.1 | EnsemblPlantsGene:Solyc03g110860.2 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | PFAM:PF00808 | SEG:seg |
| SUPFAM:SSF47113 | UniParc:UPI0002768B2B | UniProt:K4BJU9 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr3:+:61594846..61599648
Molecular Weight (calculated)
25156.8 Da
IEP (calculated)
5.036
GRAVY (calculated)
-0.468
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSPQQSAA NAAAAAAAAQ SAGYPTQPPY HHLLQQQQQQ LQVFWTYQRK EIEQVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL
101: TIRSWLHAEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR DEIKEEGAGL GPGIVGSTAS GVPYYYPPMG QPAPPGVMMG RPAMPGVDPS MYVQPPPPPS
201: QAWQSVWQAA EDNSYAGGGS NGQGNLDGQS
101: TIRSWLHAEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR DEIKEEGAGL GPGIVGSTAS GVPYYYPPMG QPAPPGVMMG RPAMPGVDPS MYVQPPPPPS
201: QAWQSVWQAA EDNSYAGGGS NGQGNLDGQS
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.