Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54177 | Soybean | nucleus | 92.44 | 90.83 |
| Bra018046.1-P | Field mustard | nucleus | 72.89 | 74.21 |
| CDY08084 | Canola | nucleus | 72.89 | 74.21 |
| CDY05857 | Canola | nucleus | 72.44 | 73.76 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 74.67 | 73.04 |
| AT3G48590.1 | Thale cress | nucleus | 75.56 | 72.65 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 73.78 | 72.17 |
| VIT_17s0000g01130.t01 | Wine grape | nucleus | 77.33 | 68.5 |
| GSMUA_Achr10P... | Banana | nucleus | 57.78 | 67.01 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 56.0 | 66.32 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 72.89 | 60.29 |
| CDX84419 | Canola | plastid | 71.56 | 56.89 |
| CDY66668 | Canola | plastid | 68.89 | 56.78 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 57.78 | 53.94 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 57.78 | 53.72 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 57.78 | 53.72 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 57.33 | 53.53 |
| Zm00001d028432_P001 | Maize | nucleus | 57.78 | 53.06 |
| Os03t0251350-00 | Rice | nucleus | 57.78 | 52.85 |
| KXG39763 | Sorghum | nucleus | 57.78 | 52.63 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 52.0 | 49.37 |
| KRH22187 | Soybean | mitochondrion | 25.78 | 47.15 |
| KRG96853 | Soybean | nucleus | 53.33 | 46.51 |
| KRH27143 | Soybean | mitochondrion | 24.89 | 45.53 |
| KRH43702 | Soybean | nucleus | 54.67 | 45.39 |
| KRH13746 | Soybean | nucleus | 53.78 | 45.15 |
| KRG92828 | Soybean | nucleus | 52.44 | 44.87 |
| KRH33966 | Soybean | nucleus | 52.44 | 44.7 |
| KRH43409 | Soybean | nucleus | 36.0 | 39.51 |
| KRH20896 | Soybean | nucleus | 30.22 | 35.42 |
| KRH20891 | Soybean | nucleus | 38.22 | 35.39 |
| KRH20893 | Soybean | nucleus | 35.56 | 29.96 |
| KRH70416 | Soybean | cytosol | 16.44 | 25.52 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100783316 | MapMan:15.5.51.3 | UniProt:A0A0R0KAB8 | EMBL:ACUP02002711 | InterPro:CBFA_NFYB_domain |
| EnsemblPlantsGene:GLYMA_04G196200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | EnsemblPlants:KRH63772 |
| ProteinID:KRH63772 | ProteinID:KRH63772.1 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | SUPFAM:SSF47113 |
| UniParc:UPI0002339383 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:46804993..46808396
Molecular Weight (calculated)
24560.0 Da
IEP (calculated)
4.717
GRAVY (calculated)
-0.393
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MENNQQQGAQ AQSGPYPGGA GGSAGAGAGA GAAPFQHLLQ QQQQQLQMFW SYQRQEIEHV NDFKNHQLPL ARIKKIMKAD EDVRMISAEA PILFAKACEL
101: FILELTIRSW LHADENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDEIKD DAALVGATAS GVPYYYPPIG QPAGMMIGRP AVDPATGVYV QPPSQAWQSV
201: WQSAAEDTPY GTGAQGNLDG QSMEF
101: FILELTIRSW LHADENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDEIKD DAALVGATAS GVPYYYPPIG QPAGMMIGRP AVDPATGVYV QPPSQAWQSV
201: WQSAAEDTPY GTGAQGNLDG QSMEF
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.