Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43702 | Soybean | nucleus | 96.27 | 95.2 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 79.48 | 79.18 |
| AT1G56170.2 | Thale cress | nucleus | 55.22 | 74.37 |
| Bra003334.1-P | Field mustard | nucleus | 49.63 | 72.28 |
| CDX67737 | Canola | nucleus | 48.51 | 69.15 |
| KXG24590 | Sorghum | nucleus | 57.84 | 61.26 |
| Os02t0170500-01 | Rice | nucleus | 58.96 | 61.0 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 56.34 | 60.4 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 53.36 | 60.34 |
| Zm00001d046967_P001 | Maize | nucleus | 55.6 | 60.08 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 56.34 | 58.98 |
| Zm00001d036648_P001 | Maize | extracellular | 53.73 | 58.78 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 55.97 | 58.59 |
| EER88787 | Sorghum | nucleus | 55.6 | 58.43 |
| GSMUA_Achr11P... | Banana | cytosol | 55.22 | 58.27 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 54.48 | 58.17 |
| KRG96853 | Soybean | nucleus | 55.97 | 58.14 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 56.34 | 58.08 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 53.36 | 55.64 |
| KRG92828 | Soybean | nucleus | 54.1 | 55.13 |
| KRH33966 | Soybean | nucleus | 54.1 | 54.92 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 52.24 | 54.69 |
| KRH54177 | Soybean | nucleus | 46.64 | 54.59 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 52.24 | 54.47 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 52.24 | 53.85 |
| KRH63772 | Soybean | nucleus | 45.15 | 53.78 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 56.34 | 51.89 |
| KRH43409 | Soybean | nucleus | 36.57 | 47.8 |
| KRH22187 | Soybean | mitochondrion | 20.9 | 45.53 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 33.21 | 45.18 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 43.66 | 44.66 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 37.69 | 44.3 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 38.43 | 44.02 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 40.67 | 43.95 |
| KRH27143 | Soybean | mitochondrion | 20.15 | 43.9 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 38.06 | 43.78 |
| KRH20891 | Soybean | nucleus | 38.06 | 41.98 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 36.19 | 41.63 |
| KXG24666 | Sorghum | nucleus | 34.33 | 41.07 |
| KRH20896 | Soybean | nucleus | 28.73 | 40.1 |
| KRH20893 | Soybean | nucleus | 36.19 | 36.33 |
| Os08t0206500-00 | Rice | nucleus | 35.45 | 33.69 |
| KRH70416 | Soybean | cytosol | 14.93 | 27.59 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100799981 | MapMan:15.5.51.3 | EMBL:ACUP02009783 | EMBL:BT099282 | UniProt:C6TNG0 |
| InterPro:CBFA_NFYB_domain | EnsemblPlantsGene:GLYMA_15G261300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| EnsemblPlants:KRH13746 | ProteinID:KRH13746 | ProteinID:KRH13746.1 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 |
| SUPFAM:SSF47113 | UniParc:UPI000152A180 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr15:+:49382502..49385627
Molecular Weight (calculated)
30137.9 Da
IEP (calculated)
6.707
GRAVY (calculated)
-0.592
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSEQTQQQ HQHGMGVATG ASQMAYSSHY PTAPMVASGT PAVAVPSPTQ APAAFSSSAH QLAYQQAQHF HHQQQQHQQQ QLQMFWSNQM QEIEQTIDFK
101: NHSLPLARIK KIMKADEDVR MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRND VFDFLVDIIP RDELKEEGLG ITKATIPLVN
201: SPADMPYYYV PPQHPVVGPP GMIMGKPVGA EQATLYSTQQ PRPPMAFMPW PHTQPQQQQP PQHQQTDS
101: NHSLPLARIK KIMKADEDVR MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRND VFDFLVDIIP RDELKEEGLG ITKATIPLVN
201: SPADMPYYYV PPQHPVVGPP GMIMGKPVGA EQATLYSTQQ PRPPMAFMPW PHTQPQQQQP PQHQQTDS
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.