Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0480700-01 | Rice | nucleus | 28.37 | 47.62 |
| Bra003334.1-P | Field mustard | nucleus | 29.08 | 44.57 |
| AT1G56170.2 | Thale cress | nucleus | 31.21 | 44.22 |
| CDX67737 | Canola | nucleus | 29.08 | 43.62 |
| Os08t0496500-01 | Rice | nucleus | 29.79 | 40.98 |
| Os04t0683400-00 | Rice | mitochondrion | 17.02 | 38.4 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 35.11 | 36.8 |
| KXG24666 | Sorghum | nucleus | 29.08 | 36.61 |
| Os03t0251350-00 | Rice | nucleus | 31.91 | 36.59 |
| Os02t0170500-01 | Rice | nucleus | 33.33 | 36.29 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 31.91 | 36.0 |
| KRH13746 | Soybean | nucleus | 33.69 | 35.45 |
| KRH43702 | Soybean | nucleus | 34.04 | 35.42 |
| GSMUA_Achr11P... | Banana | cytosol | 30.85 | 34.25 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 24.82 | 31.25 |
| GSMUA_Achr11P... | Banana | cytosol | 32.27 | 29.64 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 25.89 | 28.29 |
| Os05t0304800-01 | Rice | nucleus | 12.77 | 11.01 |
| Os10t0191900-00 | Rice | nucleus | 12.77 | 10.75 |
| Os01t0102400-01 | Rice | nucleus | 14.89 | 9.98 |
| Os01t0580400-01 | Rice | nucleus | 15.25 | 9.73 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | UniProt:A0A0N7KPF9 | ProteinID:BAT04306.1 | InterPro:CBFA_NFYB_domain | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0019953 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | EnsemblPlantsGene:Os08g0206500 | EnsemblPlants:Os08t0206500-00 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF67 |
| SUPFAM:SSF47113 | UniParc:UPI0003939596 | SEG:seg | : | : | : |
Description
Similar to HAP5 subunit of HAP complex. (Os08t0206500-00)
Coordinates
chr8:-:6212073..6217326
Molecular Weight (calculated)
31607.4 Da
IEP (calculated)
6.403
GRAVY (calculated)
-0.689
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKSAYGGA IGVWTPMRES WGSASAVTSA RPFVTNNVIP AIWSRIAPSL PPSPLPRRPR SALAHCRASP ASVSPSARAS PTPPSPRSPP HQHQQHAIQQ
101: VQQLQQQQKE QLQAFWADQM AEVEQMTEFK LPNLPLARIK KIMKADEDVK MIAGEAPALF AKACEMFILD MTLRSWQHTE EGRRRTLQRS DVEAVIKKTD
201: IFDFLVDIIT DDKMKDDGMG SQAASMVSPY TSGGMGFSFD LYPNQHHLAY MWPPQEQQEQ WPPQEQQEQK QKQDSDGGGQ DE
101: VQQLQQQQKE QLQAFWADQM AEVEQMTEFK LPNLPLARIK KIMKADEDVK MIAGEAPALF AKACEMFILD MTLRSWQHTE EGRRRTLQRS DVEAVIKKTD
201: IFDFLVDIIT DDKMKDDGMG SQAASMVSPY TSGGMGFSFD LYPNQHHLAY MWPPQEQQEQ WPPQEQQEQK QKQDSDGGGQ DE
001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
Arabidopsis Description
NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.