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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 1
  • cytosol 2
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH13746 Soybean nucleus 95.2 96.27
VIT_19s0085g00520.t01 Wine grape cytosol 79.34 79.93
AT1G56170.2 Thale cress nucleus 55.35 75.38
Bra003334.1-P Field mustard nucleus 49.08 72.28
CDX67737 Canola nucleus 47.97 69.15
KXG24590 Sorghum nucleus 57.2 61.26
Os02t0170500-01 Rice nucleus 58.3 61.0
Os06t0667100-01 Rice cytosol, nucleus, plastid 56.09 60.8
Zm00001d046967_P001 Maize nucleus 55.35 60.48
KRH68581 Soybean cytoskeleton, cytosol, nucleus, plastid 52.77 60.34
Zm00001d036648_P001 Maize extracellular 54.24 60.0
TraesCS6D01G147300.1 Wheat nucleus 56.09 59.38
EER88787 Sorghum nucleus 55.72 59.22
GSMUA_Achr11P... Banana cytosol 55.35 59.06
TraesCS6A01G157900.1 Wheat nucleus 55.72 58.98
HORVU6Hr1G032200.1 Barley nucleus 56.09 58.46
KRG96853 Soybean nucleus 55.35 58.14
Zm00001d024230_P001 Maize nucleus, plastid 53.51 57.77
TraesCS7D01G463100.1 Wheat nucleus 52.77 55.64
KRH54177 Soybean nucleus 46.86 55.46
KRG92828 Soybean nucleus 53.51 55.13
KRH33966 Soybean nucleus 53.51 54.92
TraesCS7B01G377500.1 Wheat nucleus 51.66 54.69
KRH63772 Soybean nucleus 45.39 54.67
TraesCS7A01G475400.1 Wheat nucleus 51.66 54.47
HORVU7Hr1G108370.1 Barley nucleus 51.29 53.46
TraesCS6B01G185700.1 Wheat cytosol 56.09 52.23
KRH43409 Soybean nucleus 36.53 48.29
TraesCS7D01G462200.1 Wheat nucleus 44.28 45.8
TraesCS7D01G462100.1 Wheat nucleus 33.21 45.69
TraesCS7B01G377200.1 Wheat nucleus 40.96 44.76
KRH22187 Soybean mitochondrion 20.3 44.72
TraesCS7B01G376500.1 Wheat nucleus 37.27 44.3
TraesCS7A01G474800.1 Wheat nucleus 38.01 44.02
TraesCS3D01G102500.1 Wheat nucleus 37.64 43.78
KRH27143 Soybean mitochondrion 19.56 43.09
TraesCS7B01G377000.1 Wheat nucleus 36.16 42.06
KRH20891 Soybean nucleus 37.64 41.98
KXG24666 Sorghum nucleus 33.95 41.07
KRH20896 Soybean nucleus 28.41 40.1
KRH20893 Soybean nucleus 36.16 36.7
Os08t0206500-00 Rice nucleus 35.42 34.04
KRH70416 Soybean cytosol 15.13 28.28
Protein Annotations
Gene3D:1.10.20.10EntrezGene:100796987MapMan:15.5.51.3EMBL:ACUP02004883InterPro:CBFA_NFYB_domainEnsemblPlantsGene:GLYMA_08G165700
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0046982InterPro:Histone-foldUniProt:I1KTY0InterPro:IPR009072ProteinID:KRH43701.1
EnsemblPlants:KRH43702ProteinID:KRH43702ProteinID:KRH43702.1PFAM:PF00808PANTHER:PTHR10252PANTHER:PTHR10252:SF71
SUPFAM:SSF47113UniParc:UPI000152A2EBSEG:seg:::
Description
hypothetical protein
Coordinates
chr8:-:13064888..13068920
Molecular Weight (calculated)
30427.2 Da
IEP (calculated)
6.650
GRAVY (calculated)
-0.566
Length
271 amino acids
Sequence
(BLAST)
001: MDKSEQTQQQ QQQQQHVMGV AAGASQMAYS SHYPTASMVA SGTPAVTAPS PTQAPAAFSS SAHQLAYQQA QHFHHQQQQH QQQQLQMFWS NQMQEIEQTI
101: DFKNHSLPLA RIKKIMKADE DVRMISAEAP VIFAKACEMF ILELTLRSWI HTEENKRRTL QKNDIAAAIS RNDVFDFLVD IIPRDELKEE GLGITKATIP
201: LVGSPADMPY YYVPPQHPVV GPPGMIMGKP IGAEQATLYS TQQPRPPVAF MPWPHTQPLQ QQPPQHQQTD S
Best Arabidopsis Sequence Match ( AT1G08970.1 )
(BLAST)
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
Arabidopsis Description
NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.