Factsheet for Os06t0667100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88787	Sorghum	nucleus	81.2	79.61
Zm00001d046967_P001	Maize	nucleus	78.8	79.44
Zm00001d036648_P001	Maize	extracellular	76.4	77.96
TraesCS7D01G463100.1	Wheat	nucleus	79.6	77.43
Os02t0170500-01	Rice	nucleus	80.0	77.22
TraesCS7A01G475400.1	Wheat	nucleus	78.4	76.26
TraesCS7B01G377500.1	Wheat	nucleus	77.6	75.78
HORVU7Hr1G108370.1	Barley	nucleus	76.8	73.85
Bra003334.1-P	Field mustard	nucleus	47.2	64.13
AT1G56170.2	Thale cress	nucleus	50.0	62.81
Os09t0480700-01	Rice	nucleus	41.6	61.9
CDX67737	Canola	nucleus	46.0	61.17
KRH13746	Soybean	nucleus	60.4	56.34
GSMUA_Achr11P...	Banana	cytosol	57.2	56.3
VIT_19s0085g00520.t01	Wine grape	cytosol	60.4	56.13
Os08t0496500-01	Rice	nucleus	46.0	56.1
KRH43702	Soybean	nucleus	60.8	56.09
TraesCS7D01G462200.1	Wheat	nucleus	55.6	53.05
TraesCS3D01G102500.1	Wheat	nucleus	49.2	52.79
GSMUA_Achr5P26790_001	Banana	cytosol	47.2	52.68
TraesCS7A01G474800.1	Wheat	nucleus	48.8	52.14
TraesCS7B01G377200.1	Wheat	nucleus	51.2	51.61
TraesCS7B01G376500.1	Wheat	nucleus	46.8	51.32
TraesCS7B01G377000.1	Wheat	nucleus	47.6	51.07
TraesCS7D01G462100.1	Wheat	nucleus	39.6	50.25
Os03t0251350-00	Rice	nucleus	47.6	48.37
Os04t0683400-00	Rice	mitochondrion	23.2	46.4
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	45.6	44.19
GSMUA_Achr11P...	Banana	cytosol	53.6	43.65
Os08t0206500-00	Rice	nucleus	36.0	31.91
Os10t0191900-00	Rice	nucleus	18.8	14.03
Os01t0102400-01	Rice	nucleus	23.6	14.01
Os05t0304800-01	Rice	nucleus	18.0	13.76
Os01t0580400-01	Rice	nucleus	22.8	12.9

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EntrezGene:4341785	EMBL:AK066630	ProteinID:BAD45412.1	ProteinID:BAF20226.1
ProteinID:BAF64450.1	ProteinID:BAS99044.1	InterPro:CBFA_NFYB_domain	ProteinID:EAZ37943.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0046982	GO:GO:0048579	InterPro:Histone-fold	InterPro:IPR009072
EnsemblPlantsGene:Os06g0667100	EnsemblPlants:Os06t0667100-01	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74	UniProt:Q655V5
SUPFAM:SSF47113	UniParc:UPI000043A2AB	RefSeq:XP_015644345.1	SEG:seg	:	:

Description

HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEXSimilar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC. (Os06t0667100-01)

Coordinates

chr6:+:27627768..27633037

Molecular Weight (calculated)

27838.8 Da

IEP (calculated)

4.692

GRAVY (calculated)

-0.573

Length

250 amino acids

Sequence
(BLAST)

001: MEPSSQPQPA IGVVAGGSQV YPAYRPAATV PTAPAVIPAG SQPAPSFPAN PDQLSAQHQL VYQQAQQFHQ QLQQQQQRQL QQFWAERLVD IEQTTDFKNH
101: SLPLARIKKI MKADEDVRMI SAEAPVIFAK ACEIFILELT LRSWMHTEEN KRRTLQKNDI AAAITRTDMY DFLVDIVPRD DLKEEGVGLP RAGLPPLGVP
201: ADSYPYGYYV PQQQVPGAGI AYGGQQGHPG YLWQDPQEQQ EEPPAEQQSD

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.