Factsheet for TraesCS7D01G462200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G377200.1	Wheat	nucleus	86.26	91.13
TraesCS3D01G102500.1	Wheat	nucleus	56.87	63.95
TraesCS7D01G462100.1	Wheat	nucleus	47.33	62.94
TraesCS7D01G463100.1	Wheat	nucleus	58.4	59.53
EER88787	Sorghum	nucleus	54.58	56.08
Os06t0667100-01	Rice	cytosol, nucleus, plastid	53.05	55.6
TraesCS6D01G147300.1	Wheat	nucleus	53.82	55.08
Zm00001d046967_P001	Maize	nucleus	51.91	54.84
Zm00001d036648_P001	Maize	extracellular	51.15	54.69
Bra003334.1-P	Field mustard	nucleus	35.88	51.09
CDX67737	Canola	nucleus	34.73	48.4
AT1G56170.2	Thale cress	nucleus	36.64	48.24
TraesCS7D01G237100.1	Wheat	nucleus	35.11	46.23
VIT_19s0085g00520.t01	Wine grape	cytosol	45.8	44.61
GSMUA_Achr11P...	Banana	cytosol	43.13	44.49
KRH43702	Soybean	nucleus	45.8	44.28
TraesCS5D01G265000.1	Wheat	nucleus	33.97	43.84
KRH13746	Soybean	nucleus	44.66	43.66
TraesCS4D01G223400.1	Wheat	nucleus	38.17	41.32
GSMUA_Achr5P26790_001	Banana	cytosol	35.11	41.07
TraesCS1D01G355600.1	Wheat	mitochondrion	18.32	35.56
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	34.73	35.27
TraesCS1D01G354400.1	Wheat	mitochondrion	18.32	34.04
GSMUA_Achr11P...	Banana	cytosol	39.31	33.55
TraesCS7D01G344400.1	Wheat	cytosol	17.56	11.19

Protein Annotations

EnsemblPlants:TraesCS7D01G462200.1	EnsemblPlantsGene:TraesCS7D01G462200	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	ncoils:Coil	PANTHER:PTHR10252
PANTHER:PTHR10252:SF74	PFAM:PF00808	SEG:seg	SUPFAM:SSF47113	MapMan:15.5.51.3	:

Description

No Description!

Coordinates

chr7D:+:577961979..577964162

Molecular Weight (calculated)

29133.8 Da

IEP (calculated)

6.161

GRAVY (calculated)

-0.560

Length

262 amino acids

Sequence
(BLAST)

001: MYCTVPERRS WQPELAMGDV AGGSQVYPAS AYPPGATVAA APGITPAGSQ PMPPFPANPA QLSAQNQLMY EQSQQYQQQL QQLHQRRLQQ FWAQQRSEIE
101: QATDIKKHPV QLKRIRKIMK ADEGVHMISA EAPVVFSKAC EMLTLEMTMR SWMVTEENKR RILKKSDVAA AVARTDVYDF LADIIPLDEM KEEGVGLHRA
201: GPPPPPLGAP AGAYPYYYPP QLQVPGAAMV HGGQQVPQGH LPHVWIDLQE QQEKEDQQSE SG

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.