Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P26790_001 | Banana | cytosol | 63.95 | 73.66 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 32.95 | 62.5 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 31.4 | 55.48 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 32.56 | 52.83 |
| GSMUA_Achr11P... | Banana | cytosol | 48.84 | 49.61 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 34.88 | 46.15 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 44.19 | 45.6 |
| KXG24590 | Sorghum | nucleus | 43.8 | 44.66 |
| Os02t0170500-01 | Rice | nucleus | 44.19 | 44.02 |
| EER88787 | Sorghum | nucleus | 42.25 | 42.75 |
| Zm00001d046967_P001 | Maize | nucleus | 41.09 | 42.74 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 41.86 | 42.19 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 41.47 | 41.8 |
| Zm00001d036648_P001 | Maize | extracellular | 39.53 | 41.63 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 41.86 | 41.54 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 39.92 | 41.04 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 39.53 | 39.69 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 28.68 | 38.95 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 38.76 | 38.91 |
| GSMUA_Achr11P... | Banana | cytosol | 46.12 | 38.76 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 37.98 | 38.28 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 38.37 | 38.08 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 41.86 | 37.11 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 28.29 | 37.06 |
| GSMUA_Achr10P... | Banana | nucleus | 27.13 | 36.08 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 14.34 | 35.24 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 31.78 | 35.19 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 31.01 | 35.09 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 31.4 | 34.76 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 35.27 | 34.73 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 31.01 | 34.19 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 32.17 | 33.47 |
| KXG24666 | Sorghum | nucleus | 25.58 | 29.46 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 13.95 | 28.57 |
| Os08t0206500-00 | Rice | nucleus | 28.29 | 25.89 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 37.21 | 14.08 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P23600_001 | EnsemblPlants:GSMUA_Achr3T23600_001 | EnsemblPlantsGene:GSMUA_Achr3G23600_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF74 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI000295243A | UniProt:M0SH76 | MapMan:35.1 | : |
Description
core histone H2A/H2B/H3/H4, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G23600_001]
Coordinates
chr3:-:24402349..24405477
Molecular Weight (calculated)
28134.7 Da
IEP (calculated)
9.670
GRAVY (calculated)
-0.194
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSTQPSRP VIGVVSGAAQ TAYAAPTYQR AAVVTGDPAV TGAVPPPTQM TSAYPTNPAN LASQHQLAYQ QVQQLHHQQH QQLQAFWANQ MLEIEQTTDF
101: KNHSLPLARI KKIMKADGDR RTLQKNDIAS AVTRTDIFDF LVDIVPRDEL KDDGIGIARA AFPAVGAPAD SIPYYYVPAP SQVPGPAMMM GKPVDQAAAA
201: TINSRYQMVS KLTYVLSSVW MLRGMSSRVA CTLSNASIVQ VVAKIVVSRP QWKFAQQQ
101: KNHSLPLARI KKIMKADGDR RTLQKNDIAS AVTRTDIFDF LVDIVPRDEL KDDGIGIARA AFPAVGAPAD SIPYYYVPAP SQVPGPAMMM GKPVDQAAAA
201: TINSRYQMVS KLTYVLSSVW MLRGMSSRVA CTLSNASIVQ VVAKIVVSRP QWKFAQQQ
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.