Factsheet for TraesCS3D01G102500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G462100.1	Wheat	nucleus	78.97	93.4
TraesCS7B01G377000.1	Wheat	nucleus	91.85	91.85
TraesCS7A01G474800.1	Wheat	nucleus	90.56	90.17
TraesCS7D01G462200.1	Wheat	nucleus	63.95	56.87
TraesCS7D01G463100.1	Wheat	nucleus	56.22	50.97
Os06t0667100-01	Rice	cytosol, nucleus, plastid	52.79	49.2
EER88787	Sorghum	nucleus	53.65	49.02
Zm00001d046967_P001	Maize	nucleus	51.5	48.39
TraesCS6D01G147300.1	Wheat	nucleus	52.79	48.05
Zm00001d036648_P001	Maize	extracellular	49.36	46.94
Bra003334.1-P	Field mustard	nucleus	35.62	45.11
AT1G56170.2	Thale cress	nucleus	38.2	44.72
CDX67737	Canola	nucleus	35.19	43.62
TraesCS7D01G237100.1	Wheat	nucleus	36.48	42.71
TraesCS5D01G265000.1	Wheat	nucleus	36.05	41.38
GSMUA_Achr11P...	Banana	cytosol	45.06	41.34
VIT_19s0085g00520.t01	Wine grape	cytosol	45.06	39.03
TraesCS4D01G223400.1	Wheat	nucleus	39.91	38.43
KRH13746	Soybean	nucleus	43.78	38.06
KRH43702	Soybean	nucleus	43.78	37.64
GSMUA_Achr5P26790_001	Banana	cytosol	33.48	34.82
TraesCS1D01G355600.1	Wheat	mitochondrion	18.88	32.59
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	35.19	31.78
GSMUA_Achr11P...	Banana	cytosol	41.63	31.6
TraesCS1D01G354400.1	Wheat	mitochondrion	18.45	30.5
TraesCS7D01G344400.1	Wheat	cytosol	21.46	12.17

Protein Annotations

EnsemblPlants:TraesCS3D01G102500.1	EnsemblPlantsGene:TraesCS3D01G102500	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74
PFAM:PF00808	SEG:seg	SUPFAM:SSF47113	MapMan:15.5.51.3	:	:

Description

No Description!

Coordinates

chr3D:+:55156503..55157204

Molecular Weight (calculated)

26549.2 Da

IEP (calculated)

4.446

GRAVY (calculated)

-0.772

Length

233 amino acids

Sequence
(BLAST)

001: MVPTSQPQPA MGDVTPAGSQ PTQLFPGNPA QLSAQEQLMY EQSREYQQQL QQQQQRQLQQ FWAEQRSEIE QATDIKNHPL PPTRIRKIMK ADEDVRMISA
101: EAPALFAKAC EMFTLEMTMR SWMVTKEDKR RLLQRSDIAA AVARTDIYDF LLDLFTSEET EQGVLLPRTG QQPMGTQAGA YPYYYAPEQQ VAGASMVYGG
201: PSTYVWQEPQ VQEQGHPSST YVWQEPQQQQ EGP

Best Arabidopsis Sequence Match ( AT1G54830.1 )
(BLAST)

001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN

Arabidopsis Description

NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.